Perform differential analysis for methylation array data. Detect differentially methylated regions (DMRs) from array M-values. The core is a Non-homogeneous Hidden Markov Model for estimating spatial correlation and a novel Constrained Gaussian Mixture Model for modeling the M-value pairs of each individual locus.
| Version: | 1.1.1 |
| Depends: | MCMCpack, mvtnorm, ellipse |
| Published: | 2017-04-21 |
| Author: | Linghao SHEN |
| Maintainer: | Linghao SHEN <sl013 at ie.cuhk.edu.hk> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | DMRMark results |
| Reference manual: | DMRMark.pdf |
| Package source: | DMRMark_1.1.1.tar.gz |
| Windows binaries: | r-devel: DMRMark_1.1.1.zip, r-release: DMRMark_1.1.1.zip, r-oldrel: DMRMark_1.1.1.zip |
| macOS binaries: | r-release: DMRMark_1.1.1.tgz, r-oldrel: DMRMark_1.1.1.tgz |
| Old sources: | DMRMark archive |
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