An implementation of the computational strategy for the comprehensive analysis of condition-dependent operon maps in prokaryotes proposed by Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq transcriptome profiles to improve prokaryotic operon map inference.
Version: | 1.0 |
Depends: | R (≥ 3.0.1) |
Imports: | stats, utils, mclust, earth, plyr, seqinr, randomForest, rminer, GenomicRanges, GenomeInfoDb, S4Vectors, IRanges |
Published: | 2016-02-24 |
Author: | Vittorio Fortino |
Maintainer: | Vittorio Fortino <vittorio.fortino at ttl.fi> |
License: | GPL-3 |
NeedsCompilation: | no |
CRAN checks: | CONDOP results |
Reference manual: | CONDOP.pdf |
Package source: | CONDOP_1.0.tar.gz |
Windows binaries: | r-devel: CONDOP_1.0.zip, r-release: CONDOP_1.0.zip, r-oldrel: CONDOP_1.0.zip |
macOS binaries: | r-release: CONDOP_1.0.tgz, r-oldrel: not available |
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