BlockFeST: Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation

An R implementation of an extension of the 'BayeScan' software (Foll, 2008) <doi:10.1534/genetics.108.092221> for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.

Version: 1.6
Depends: R (≥ 2.14.2), BASIX
Imports: methods
Suggests: PopGenome
Published: 2018-05-07
Author: Bastian Pfeifer
Maintainer: Bastian Pfeifer <bastianxpfeifer at gmail.com>
License: GPL-2
NeedsCompilation: yes
CRAN checks: BlockFeST results

Downloads:

Reference manual: BlockFeST.pdf
Vignettes: Input format
Package source: BlockFeST_1.6.tar.gz
Windows binaries: r-devel: BlockFeST_1.6.zip, r-release: BlockFeST_1.6.zip, r-oldrel: BlockFeST_1.6.zip
macOS binaries: r-release: BlockFeST_1.6.tgz, r-oldrel: BlockFeST_1.6.tgz
Old sources: BlockFeST archive

Reverse dependencies:

Reverse suggests: PopGenome

Linking:

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