Description of supported items

Description of supported items

Partial meta information of tools/scripts and databases are saved in the followed files. You can get the file list by command unname(unlist(get.meta()[1:4])).

We do not show the meta information of annovarR supported items in this vignette.

library(BioInstaller)
meta_info <- get.meta(read.config.params = list(rcmd.parse = TRUE))
unname(unlist(meta_info[1:4]))
#> [1] "/private/var/folders/nc/yl5qhkkn6vxf_m7s_yz2kzvh0000gn/T/RtmpAn3eId/Rinstbba16d1b57bc/BioInstaller/extdata/config/db/db_meta.toml"              
#> [2] "/private/var/folders/nc/yl5qhkkn6vxf_m7s_yz2kzvh0000gn/T/RtmpAn3eId/Rinstbba16d1b57bc/BioInstaller/extdata/config/github/github_meta.toml"      
#> [3] "/private/var/folders/nc/yl5qhkkn6vxf_m7s_yz2kzvh0000gn/T/RtmpAn3eId/Rinstbba16d1b57bc/BioInstaller/extdata/config/nongithub/nongithub_meta.toml"
#> [4] "/private/var/folders/nc/yl5qhkkn6vxf_m7s_yz2kzvh0000gn/T/RtmpAn3eId/Rinstbba16d1b57bc/BioInstaller/extdata/config/web/web_meta.toml"

The followed tables show partial items description that have been collected in BioInstaller package including Github items, Non-github items and Database items.

A curated list of resources for learning bioinformatics

BioInstaller also provides a simplified and curated list of resources for learning bioinformatics, such as sequencing method, web service, command-line tools and database resources. You can get it from here.