Includes a set of functions to analyze for instance nucleotide frequencies as well as transition and transversion. Can reconstruct germline sequences based on the international ImMunoGeneTics information system (IMGT/HighV-QUEST) outputs, calculate and plot the difference (%) of nucleotides at 6 positions around a mutation to identify and characterize hotspot motifs as well as calculate and plot average mutation frequencies of nucleotide mutations resulting in amino acid substitution.
| Version: | 0.3.4 |
| Depends: | R (≥ 3.2.5), ggplot2, reshape2, grid |
| Suggests: | graphics, utils, knitr, rmarkdown |
| Published: | 2017-03-08 |
| Author: | Olena Ohlei |
| Maintainer: | Olena Ohlei <olena.ohlei at student.uni-luebeck.de> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://www.r-project.org |
| NeedsCompilation: | no |
| CRAN checks: | BCellMA results |
| Reference manual: | BCellMA.pdf |
| Vignettes: |
Vignette Title |
| Package source: | BCellMA_0.3.4.tar.gz |
| Windows binaries: | r-devel: BCellMA_0.3.4.zip, r-release: BCellMA_0.3.4.zip, r-oldrel: BCellMA_0.3.4.zip |
| macOS binaries: | r-release: BCellMA_0.3.4.tgz, r-oldrel: BCellMA_0.3.4.tgz |
| Old sources: | BCellMA archive |
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