A method for finding an enrichment of cancer simple somatic mutations (SNVs and Indels) in functional elements across the human genome. 'ActiveDriverWGS' detects coding and noncoding driver elements using whole genome sequencing data.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.0.2) |
| Imports: | BSgenome, BSgenome.Hsapiens.UCSC.hg19, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, plyr |
| Suggests: | knitr, testthat, rmarkdown |
| Published: | 2019-03-22 |
| Author: | Helen Zhu [aut, cre], Juri Reimand [aut] |
| Maintainer: | Helen Zhu <helen.zhu at oicr.on.ca> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | ActiveDriverWGS results |
| Reference manual: | ActiveDriverWGS.pdf |
| Vignettes: |
ActiveDriverWGS |
| Package source: | ActiveDriverWGS_1.0.1.tar.gz |
| Windows binaries: | r-devel: ActiveDriverWGS_1.0.1.zip, r-release: ActiveDriverWGS_1.0.1.zip, r-oldrel: ActiveDriverWGS_1.0.1.zip |
| macOS binaries: | r-release: ActiveDriverWGS_1.0.1.tgz, r-oldrel: not available |
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