Last updated on 2020-08-07 01:50:35 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| GSIF | 1 | 7 | 4 |
| plotKML | 4 | 8 |
Current CRAN status: ERROR: 1, NOTE: 7, OK: 4
Version: 0.5-5.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'SDMTools'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64
Version: 0.5-5.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'ORCDRC.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.5-5.1
Check: examples
Result: ERROR
Running examples in ‘GSIF-Ex.R’ failed
The error most likely occurred in:
> ### Name: SoilGrids-class
> ### Title: A class for SoilGrids - soil property and/or class maps
> ### Aliases: SoilGrids-class SoilGrids
> ### Keywords: classes
>
> ### ** Examples
>
> # load soil samples from the plotKML package:
> library(plotKML)
plotKML version 0.6-1 (2020-03-08)
URL: http://plotkml.r-forge.r-project.org/
> library(aqp)
This is aqp 1.19
Attaching package: ‘aqp’
The following object is masked from ‘package:base’:
union
> library(plyr)
> library(splines)
> library(rgdal)
Loading required package: sp
rgdal: version: 1.5-15, (SVN revision 1045)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 2.2.4, released 2018/03/19
Path to GDAL shared files: /usr/local/share/gdal
GDAL binary built with GEOS: TRUE
Loaded PROJ runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
Path to PROJ shared files: (autodetected)
Linking to sp version:1.4-2
> library(raster)
Attaching package: ‘raster’
The following objects are masked from ‘package:aqp’:
metadata, metadata<-
>
> data(eberg)
> ## subset data to 10%:
> eberg <- eberg[runif(nrow(eberg)) < .1,]
> ## sites table:
> s.lst <- c("ID", "soiltype", "TAXGRSC", "X", "Y")
> h.lst <- c("UHDICM","LHDICM","SNDMHT","SLTMHT","CLYMHT")
> sites <- eberg[,s.lst]
> ## get horizons table:
> horizons <- getHorizons(eberg, idcol="ID", sel=h.lst)
> ## create object of type "SoilProfileCollection"
> eberg.spc <- join(horizons, sites, type='inner')
Joining by: ID
> depths(eberg.spc) <- ID ~ UHDICM + LHDICM
Warning: converting IDs from factor to character
> site(eberg.spc) <- as.formula(paste("~", paste(s.lst[-1], collapse="+"), sep=""))
> coordinates(eberg.spc) <- ~X+Y
> proj4string(eberg.spc) <- CRS("+init=epsg:31467")
> ## convert to logits:
> eberg.spc@horizons$SNDMHT.t <- log((eberg.spc@horizons$SNDMHT/100)/
+ (1-eberg.spc@horizons$SNDMHT/100))
> ## convert to geosamples:
> eberg.geo <- as.geosamples(eberg.spc)
Reprojecting to +init=epsg:4326 +proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0 ...
Warning in wkt(obj) : CRS object has no comment
Warning in wkt(CRS(tg)) : CRS object has no comment
Error in project(t(bbox(obj))[, 1:2], tg, inv = TRUE, use_aoi = FALSE) :
is.character(proj) is not TRUE
Calls: as.geosamples ... spTransform -> spTransform -> get_aoi -> project -> stopifnot
Execution halted
Flavor: r-patched-solaris-x86
Current CRAN status: ERROR: 4, OK: 8
Version: 0.6-1
Check: examples
Result: ERROR
Running examples in ‘plotKML-Ex.R’ failed
The error most likely occurred in:
> ### Name: kml_layer.SpatialLines
> ### Title: Writes spatial lines to KML
> ### Aliases: kml_layer.SpatialLines SpatialLines
> ### Keywords: spatial
>
> ### ** Examples
>
> library(rgdal)
Loading required package: sp
rgdal: version: 1.5-15, (SVN revision 1045)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.0.4, released 2020/01/28
Path to GDAL shared files: /usr/share/gdal
GDAL binary built with GEOS: TRUE
Loaded PROJ runtime: Rel. 6.3.2, May 1st, 2020, [PJ_VERSION: 632]
Path to PROJ shared files: /usr/share/proj
Linking to sp version:1.4-2
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
> library(sp)
> data(eberg_contours)
> data(SAGA_pal)
> names(eberg_contours)
[1] "ID" "Z"
> # KML plot with elevations used as 'colour' argument:
> kml.file = paste0(tempdir(), "/eberg_contours.kml")
> kml(eberg_contours, file.name = kml.file,
+ colour_scale = SAGA_pal[[1]], colour = Z)
KML file opened for writing...
Reprojecting to +proj=longlat +datum=WGS84 +no_defs ...
Warning in spTransform(xSP, CRSobj, ...) :
NULL source CRS comment, falling back to PROJ string
Warning in spTransform(xSP, CRSobj, ...) : +init dropped in PROJ string
Warning in wkt(obj) : CRS object has no comment
Warning in showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Deutsches_Hauptdreiecksnetz in CRS definition,
but +towgs84= values preserved
Error in project(t(bbox(obj))[, 1:2], tg, inv = TRUE, use_aoi = FALSE) :
coordinate operation creation failed: generic error of unknown origin
Calls: kml ... spTransform -> spTransform -> spTransform -> get_aoi -> project
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.6-1
Check: examples
Result: ERROR
Running examples in ‘plotKML-Ex.R’ failed
The error most likely occurred in:
> ### Name: check_projection
> ### Title: Extracts the proj4 parameters and checks if the projection
> ### matches the referent CRS
> ### Aliases: check_projection parse_proj4 extractProjValue
> ### Keywords: spatial
>
> ### ** Examples
>
> data(eberg)
> library(sp)
> library(rgdal)
rgdal: version: 1.5-15, (SVN revision 1045)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 2.2.4, released 2018/03/19
Path to GDAL shared files: /usr/local/share/gdal
GDAL binary built with GEOS: TRUE
Loaded PROJ runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
Path to PROJ shared files: (autodetected)
Linking to sp version:1.4-2
> coordinates(eberg) <- ~X+Y
> proj4string(eberg) <- CRS("+init=epsg:31467")
> check_projection(eberg)
[1] FALSE
> # not yet ready for export to KML;
> parse_proj4(proj4string(eberg))
init proj datum no_defs ellps towgs84
"epsg:31467" "tmerc" "potsdam" NA "bessel" NA
> eberg.geo <- reproject(eberg)
Reprojecting to +init=epsg:4326 +proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0 ...
Warning in wkt(obj) : CRS object has no comment
Warning in wkt(CRS(tg)) : CRS object has no comment
Error in project(t(bbox(obj))[, 1:2], tg, inv = TRUE, use_aoi = FALSE) :
is.character(proj) is not TRUE
Calls: reproject ... spTransform -> spTransform -> get_aoi -> project -> stopifnot
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.6-1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘jss1079.Rnw’ using Sweave
Loading required package: gstat
Loading required package: raster
Loading required package: sp
Loading required package: plotKML
plotKML version 0.6-1 (2020-03-08)
URL: http://plotkml.r-forge.r-project.org/
Loading required package: GSIF
GSIF version 0.5-5.1 (2019-01-04)
URL: http://gsif.r-forge.r-project.org/
Reprojecting to +init=epsg:4326 +proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0 ...
Warning in wkt(obj) : CRS object has no comment
Warning in wkt(CRS(tg)) : CRS object has no comment
Error: processing vignette 'jss1079.Rnw' failed with diagnostics:
chunk 7
Error in project(t(bbox(obj))[, 1:2], tg, inv = TRUE, use_aoi = FALSE) :
is.character(proj) is not TRUE
--- failed re-building 'jss1079.Rnw'
SUMMARY: processing the following file failed:
'jss1079.Rnw'
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.6-1
Check: examples
Result: ERROR
Running examples in 'plotKML-Ex.R' failed
The error most likely occurred in:
> ### Name: kml_layer.SpatialLines
> ### Title: Writes spatial lines to KML
> ### Aliases: kml_layer.SpatialLines SpatialLines
> ### Keywords: spatial
>
> ### ** Examples
>
> library(rgdal)
Loading required package: sp
rgdal: version: 1.5-15, (SVN revision 1045)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.0.4, released 2020/01/28
Path to GDAL shared files: D:/temp/RtmpgLCKoa/RLIBS_452c22cb619f/rgdal/gdal
GDAL binary built with GEOS: TRUE
Loaded PROJ runtime: Rel. 6.3.1, February 10th, 2020, [PJ_VERSION: 631]
Path to PROJ shared files: D:/temp/RtmpgLCKoa/RLIBS_452c22cb619f/rgdal/proj
Linking to sp version:1.4-2
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
> library(sp)
> data(eberg_contours)
> data(SAGA_pal)
> names(eberg_contours)
[1] "ID" "Z"
> # KML plot with elevations used as 'colour' argument:
> kml.file = paste0(tempdir(), "/eberg_contours.kml")
> kml(eberg_contours, file.name = kml.file,
+ colour_scale = SAGA_pal[[1]], colour = Z)
KML file opened for writing...
Reprojecting to +proj=longlat +datum=WGS84 +no_defs ...
Warning in spTransform(xSP, CRSobj, ...) :
NULL source CRS comment, falling back to PROJ string
Warning in spTransform(xSP, CRSobj, ...) : +init dropped in PROJ string
Warning in wkt(obj) : CRS object has no comment
Warning in showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Deutsches_Hauptdreiecksnetz in CRS definition,
but +towgs84= values preserved
Error in project(t(bbox(obj))[, 1:2], tg, inv = TRUE, use_aoi = FALSE) :
coordinate operation creation failed: generic error of unknown origin
Calls: kml ... spTransform -> spTransform -> spTransform -> get_aoi -> project
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64