Last updated on 2020-08-07 01:50:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.5 | 3.88 | 50.53 | 54.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.5 | 3.38 | 37.81 | 41.19 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.5 | 70.05 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.5 | 58.60 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.4.5 | 16.00 | 70.00 | 86.00 | OK | |
| r-patched-linux-x86_64 | 0.4.5 | 4.97 | 47.16 | 52.13 | OK | |
| r-patched-solaris-x86 | 0.4.5 | 89.60 | WARN | |||
| r-release-linux-x86_64 | 0.4.5 | 5.15 | 46.69 | 51.84 | OK | |
| r-release-macos-x86_64 | 0.4.5 | WARN | ||||
| r-release-windows-ix86+x86_64 | 0.4.5 | 17.00 | 61.00 | 78.00 | OK | |
| r-oldrel-macos-x86_64 | 0.4.5 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.4.5 | 9.00 | 68.00 | 77.00 | OK |
Version: 0.4.5
Check: Rd cross-references
Result: NOTE
Undeclared packages ‘tidyfst’, ‘tidyr’, ‘fastDummies’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
*** caught segfault ***
address 0, cause 'memory not mapped'
*** caught segfault ***
address 179affe8, cause 'memory not mapped'
Traceback:
1: fstretrieve(file_name, columns, from, to)
2: read_fst(meta_info$path, j)
3: `[.fst_table`(ft, logical_vec)
4: ft[logical_vec]
5: setDT(ft[logical_vec])
6: select_fst(., Species, Sepal.Length, Sepal.Width)
7: function_list[[i]](value)
8: freduce(value, `_function_list`)
9: `_fseq`(`_lhs`)
10: eval(quote(`_fseq`(`_lhs`)), env, env)
11: eval(quote(`_fseq`(`_lhs`)), env, env)
12: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
13: ft %>% select_fst(Species, Sepal.Length, Sepal.Width) %>% rename(group = Species, sl = Sepal.Length, sw = Sepal.Width) %>% arrange(group, sl) %>% filter(sl > 5) %>% distinct(sl, .keep_all = TRUE) %>% summarise(sw = max(sw), by = group)
14: eval(substitute(expr), envir = parent.frame())
15: eval(substitute(expr), envir = parent.frame())
16: sys_time_print({ res = ft %>% select_fst(Species, Sepal.Length, Sepal.Width) %>% rename(group = Species, sl = Sepal.Length, sw = Sepal.Width) %>% arrange(group, sl) %>% filter(sl > 5) %>% distinct(sl, .keep_all = TRUE) %>% summarise(sw = max(sw), by = group)})
17: eval(expr, envir, enclos)
18: eval(expr, envir, enclos)
19: withVisible(eval(expr, envir, enclos))
20: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
21: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
22: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
23: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
24: evaluate::evaluate(...)
25: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
26: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
27: block_exec(params)
28: call_block(x)
29: process_group.block(group)
30: process_group(group)
31: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
32: process_file(text, output)
33: knit(input, text = text, envir = envir, quiet = quiet)
34: knit2html(..., force_v1 = TRUE)
35: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
36: vweave(...)
37: engine$weave(file, quiet = quiet, encoding = enc)
38: doTryCatch(return(expr), name, parentenv, handler)
39: tryCatchOne(expr, names, parentenv, handlers[[1L]])
40: tryCatchList(expr, classes, parentenv, handlers)
41: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
42: tools:::buildVignettes(dir = `_lhs`, ser_elibs = "/tmp/RtmpTlai3y/file31b94e9bd24.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: fstretrieve(file_name, columns, from, to)
2: read_fst(meta_info$path, j)
3: `[.fst_table`(ft, logical_vec)
4: ft[logical_vec]
5: setDT(ft[logical_vec])
6: select_fst(., Species, Sepal.Length, Sepal.Width)
7: function_list[[i]](value)
8: freduce(value, `_function_list`)
9: `_fseq`(`_lhs`)
10: eval(quote(`_fseq`(`_lhs`)), env, env)
11: eval(quote(`_fseq`(`_lhs`)), env, env)
12: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
13: ft %>% select_fst(Species, Sepal.Length, Sepal.Width) %>% rename(group = Species, sl = Sepal.Length, sw = Sepal.Width) %>% arrange(group, sl) %>% filter(sl > 5) %>% distinct(sl, .keep_all = TRUE) %>% summarise(sw = max(sw), by = group)
14: eval(substitute(expr), envir = parent.frame())
15: eval(substitute(expr), envir = parent.frame())
16: sys_time_print({ res = ft %>% select_fst(Species, Sepal.Length, Sepal.Width) %>% rename(group = Species, sl = Sepal.Length, sw = Sepal.Width) %>% arrange(group, sl) %>% filter(sl > 5) %>% distinct(sl, .keep_all = TRUE) %>% summarise(sw = max(sw), by = group)})
17: eval(expr, envir, enclos)
18: eval(expr, envir, enclos)
19: withVisible(eval(expr, envir, enclos))
20: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
21: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
22: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
23: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
24: evaluate::evaluate(...)
25: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
26: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
27: block_exec(params)
28: call_block(x)
29: process_group.block(group)
30: process_group(group)
31: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
32: process_file(text, output)
33: knit(input, text = text, envir = envir, quiet = quiet)
34: knit2html(..., force_v1 = TRUE)
35: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
36: vweave(...)
37: engine$weave(file, quiet = quiet, encoding = enc)
38: doTryCatch(return(expr), name, parentenv, handler)
39: tryCatchOne(expr, names, parentenv, handlers[[1L]])
40: tryCatchList(expr, classes, parentenv, handlers)
41: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
42: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/tidyft.Rcheck/vign_test/tidyft", ser_elibs = "/tmp/RtmpTlai3y/file31b94e9bd24.rds")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86
Version: 0.4.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Introduction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 113-154 (Introduction.Rmd)
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64