Last updated on 2020-08-07 01:50:35 CEST.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| dendextend | 12 | ||
| edfun | 12 | ||
| gplots | 1 | 11 | |
| heatmaply | 3 | 9 | |
| installr | 4 |
Current CRAN status: NOTE: 12
Version: 1.13.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'd3heatmap'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64
Version: 1.13.4
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
doc 5.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.13.4
Check: Rd cross-references
Result: NOTE
Undeclared packages ‘WGCNA’, ‘moduleColor’, ‘distory’, ‘phangorn’, ‘zoo’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.13.4
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘WGCNA’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 1, OK: 11
Version: 3.0.4
Check: Rd cross-references
Result: NOTE
Undeclared package ‘r2d2’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: WARN: 3, NOTE: 9
Version: 1.1.0
Check: Rd cross-references
Result: NOTE
Unknown package 'd3heatmap' in Rd xrefs
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
doc 6.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: Rd cross-references
Result: NOTE
Undeclared package ‘d3heatmap’ in Rd xrefs
Unknown package ‘d3heatmap’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘heatmaply.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: plotly
Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
last_plot
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
layout
Loading required package: viridis
Loading required package: viridisLite
======================
Welcome to heatmaply version 1.1.0
Type citation('heatmaply') for how to cite the package.
Type ?heatmaply for the main documentation.
The github page is: https://github.com/talgalili/heatmaply/
Please submit your suggestions and bug-reports at: https://github.com/talgalili/heatmaply/issues
Or contact: <tal.galili@gmail.com>
======================
Quitting from lines 108-110 (heatmaply.Rmd)
Error: processing vignette 'heatmaply.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘heatmaply.Rmd’
SUMMARY: processing the following file failed:
‘heatmaply.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘heatmaply.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: plotly
Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
last_plot
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
layout
Loading required package: viridis
Loading required package: viridisLite
======================
Welcome to heatmaply version 1.1.0
Type citation('heatmaply') for how to cite the package.
Type ?heatmaply for the main documentation.
The github page is: https://github.com/talgalili/heatmaply/
Please submit your suggestions and bug-reports at: https://github.com/talgalili/heatmaply/issues
Or contact: <tal.galili@gmail.com>
======================
Quitting from lines 108-110 (heatmaply.Rmd)
Error: processing vignette 'heatmaply.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘heatmaply.Rmd’
SUMMARY: processing the following file failed:
‘heatmaply.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘heatmaply.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: plotly
Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
last_plot
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
layout
Loading required package: viridis
Loading required package: viridisLite
======================
Welcome to heatmaply version 1.1.0
Type citation('heatmaply') for how to cite the package.
Type ?heatmaply for the main documentation.
The github page is: https://github.com/talgalili/heatmaply/
Please submit your suggestions and bug-reports at: https://github.com/talgalili/heatmaply/issues
Or contact: <tal.galili@gmail.com>
======================
No protocol specified
Quitting from lines 108-110 (heatmaply.Rmd)
Error: processing vignette 'heatmaply.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘heatmaply.Rmd’
SUMMARY: processing the following file failed:
‘heatmaply.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 4