CRAN Package Check Results for Package supclust

Last updated on 2020-08-07 01:50:03 CEST.

Check Details

Version: 1.0-7
Check: foreign function calls
Result: NOTE
    Call with DUP:
     .C(R_clusterer, E = as.double(E), X = as.double(X), W = as.double(W),
     P = as.double(P), y = as.double(y), prob = as.double(prob),
     theta = as.double(theta), lambda = as.double(lambda * n),
     n = as.integer(n), g = as.integer(g), m = as.integer(m),
     p = as.integer(p), critflag = as.integer(critflag), penflag = as.integer(penflag),
     blockflag = as.integer(blockflag), valiflag = as.integer(valiflag),
     traceflag = as.integer(trace), genliste = integer(lSize),
     kriterium = double(lSize), DUP = FALSE)
    DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-7
Check: R code for possible problems
Result: NOTE
    .p.1gen: warning in formatC(id, wid = 6): partial argument match of
     'wid' to 'width'
    .p.1gen: warning in formatC(s, wid = 4): partial argument match of
     'wid' to 'width'
    .p.1gen: warning in formatC(format(c(round(m, digits = digits),
     0.735))[1], wid = 7, dig = 3): partial argument match of 'dig' to
     'digits'
    .p.1gen: warning in formatC(format(c(round(m, digits = digits),
     0.735))[1], wid = 7, dig = 3): partial argument match of 'wid' to
     'width'
    predict.pelora: warning in matrix(c((1/(1 + exp(-(X[, 1:(noc[i] + 1)]
     %*% koeff))))), nc = 1): partial argument match of 'nc' to 'ncol'
    ridge.coef: warning in diag(apply(X, 2, var) * lambda * nrow(X), nr =
     ncol(X)): partial argument match of 'nr' to 'nrow'
    aggtrees: no visible global function definition for 'predict'
    coef.pelora: no visible global function definition for 'fitted'
    dlda: no visible binding for global variable 'var'
    logreg: no visible global function definition for 'glm'
    logreg: no visible binding for global variable 'binomial'
    logreg: no visible global function definition for 'predict'
    plot.pelora: no visible global function definition for 'text'
    plot.wilma: no visible global function definition for 'fitted'
    plot.wilma: no visible global function definition for 'text'
    predict.pelora: no visible global function definition for 'fitted'
    predict.pelora: no visible global function definition for 'coef'
    predict.wilma: no visible global function definition for 'fitted'
    print.wilma: no visible global function definition for 'fitted'
    ridge.coef: no visible binding for global variable 'var'
    sign.change: no visible binding for global variable 'cov'
    standardize.genes: no visible binding for global variable 'sd'
    Undefined global functions or variables:
     binomial coef cov fitted glm predict sd text var
    Consider adding
     importFrom("graphics", "text")
     importFrom("stats", "binomial", "coef", "cov", "fitted", "glm",
     "predict", "sd", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 1.0-7
Check: compiled code
Result: NOTE
    File ‘supclust/libs/supclust.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0-7
Check: R code for possible problems
Result: NOTE
    .p.1gen: warning in formatC(id, wid = 6): partial argument match of
     'wid' to 'width'
    .p.1gen: warning in formatC(s, wid = 4): partial argument match of
     'wid' to 'width'
    .p.1gen: warning in formatC(format(c(round(m, digits = digits),
     0.735))[1], wid = 7, dig = 3): partial argument match of 'dig' to
     'digits'
    .p.1gen: warning in formatC(format(c(round(m, digits = digits),
     0.735))[1], wid = 7, dig = 3): partial argument match of 'wid' to
     'width'
    predict.pelora: warning in matrix(c((1/(1 + exp(-(X[, 1:(noc[i] + 1)]
     %*% koeff))))), nc = 1): partial argument match of 'nc' to 'ncol'
    ridge.coef: warning in diag(apply(X, 2, var) * lambda * nrow(X), nr =
     ncol(X)): partial argument match of 'nr' to 'nrow'
    aggtrees: no visible global function definition for ‘predict’
    coef.pelora: no visible global function definition for ‘fitted’
    dlda: no visible binding for global variable ‘var’
    logreg: no visible global function definition for ‘glm’
    logreg: no visible binding for global variable ‘binomial’
    logreg: no visible global function definition for ‘predict’
    plot.pelora: no visible global function definition for ‘plot’
    plot.pelora: no visible global function definition for ‘text’
    plot.wilma: no visible global function definition for ‘fitted’
    plot.wilma: no visible global function definition for ‘plot’
    plot.wilma: no visible global function definition for ‘text’
    predict.pelora: no visible global function definition for ‘fitted’
    predict.pelora: no visible global function definition for ‘coef’
    predict.wilma: no visible global function definition for ‘fitted’
    print.wilma: no visible global function definition for ‘fitted’
    ridge.coef: no visible binding for global variable ‘var’
    sign.change: no visible binding for global variable ‘cov’
    standardize.genes: no visible binding for global variable ‘sd’
    Undefined global functions or variables:
     binomial coef cov fitted glm plot predict sd text var
    Consider adding
     importFrom("graphics", "plot", "text")
     importFrom("stats", "binomial", "coef", "cov", "fitted", "glm",
     "predict", "sd", "var")
    to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64