Last updated on 2020-08-07 01:50:31 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| anoint | 12 | ||
| blm | 12 | ||
| ipdmeta | 12 | ||
| RISmed | 1 | 4 | 7 |
Current CRAN status: NOTE: 12
Version: 1.4
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
Warning: no function found corresponding to methods exports from 'anoint' for: 'show'
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Current CRAN status: NOTE: 12
Version: 2013.2.4.4
Check: R code for possible problems
Result: NOTE
EO: no visible global function definition for 'qnorm'
LRT: no visible global function definition for 'pchisq'
LRT.blm: no visible global function definition for 'terms'
LRT.blm: no visible global function definition for 'update'
LRT.lexpit: no visible global function definition for 'terms'
LRT.lexpit: no visible global function definition for 'update'
LRT.lexpit: no visible global function definition for 'glm'
blm: no visible binding for global variable 'na.omit'
blm: no visible global function definition for 'model.frame'
blm: no visible global function definition for 'model.matrix'
blm: no visible global function definition for 'terms'
blm.cohort: no visible binding for global variable 'na.omit'
blm.cohort : blm.cohort.optim: no visible global function definition
for 'constrOptim'
blm.cohort: no visible global function definition for 'model.frame'
blm.cohort: no visible global function definition for 'model.matrix'
blm.leverage: no visible global function definition for 'model.matrix'
blm.optim: no visible global function definition for 'constrOptim'
crude.risk: no visible binding for global variable 'na.omit'
crude.risk : risk: no visible global function definition for 'quantile'
crude.risk : covariate: no visible global function definition for
'quantile'
gof: no visible global function definition for 'quantile'
gof: no visible global function definition for 'pchisq'
gof: no visible global function definition for 'pf'
gof.pearson: no visible global function definition for 'model.matrix'
gof.pearson: no visible global function definition for 'pchisq'
influence.blm: no visible global function definition for 'binomial'
influence.blm: no visible global function definition for 'make.link'
influence.blm: no visible global function definition for 'lm.influence'
influence.lexpit: no visible global function definition for
'lm.influence'
lexpit: no visible binding for global variable 'na.omit'
lexpit: no visible global function definition for 'model.frame'
lexpit: no visible global function definition for 'model.matrix'
lexpit: no visible global function definition for 'terms'
lexpit: no visible binding for global variable 'glm'
lexpit.leverage: no visible global function definition for
'model.matrix'
predict.se.blm: no visible global function definition for
'model.matrix'
predict.se.blm: no visible global function definition for 'update'
predict.se.blm: no visible global function definition for 'terms'
risk.exposure.plot: no visible global function definition for
'scatter.smooth'
stage1.optim: no visible global function definition for 'constrOptim'
stage2.optim: no visible global function definition for 'nlm'
tapply.risk: no visible global function definition for 'model.frame'
vcov.blm.big: no visible global function definition for 'binomial'
vcov.blm.big: no visible global function definition for 'make.link'
vcov.lexpit.big: no visible global function definition for 'binomial'
vcov.lexpit.big: no visible global function definition for 'make.link'
which.at.boundary: no visible global function definition for
'model.matrix'
confint,blm: no visible global function definition for 'qnorm'
confint,lexpit: no visible global function definition for 'qnorm'
predict,blm: no visible global function definition for 'model.matrix'
predict,blm: no visible global function definition for 'update'
predict,blm: no visible global function definition for 'terms'
predict,lexpit: no visible global function definition for
'model.matrix'
predict,lexpit: no visible global function definition for 'update'
predict,lexpit: no visible global function definition for 'terms'
summary,blm : <anonymous>: no visible global function definition for
'pt'
summary,blm: no visible global function definition for 'printCoefmat'
summary,lexpit : <anonymous>: no visible global function definition for
'pt'
summary,lexpit: no visible global function definition for
'printCoefmat'
Undefined global functions or variables:
binomial constrOptim glm lm.influence make.link model.frame
model.matrix na.omit nlm pchisq pf printCoefmat pt qnorm quantile
scatter.smooth terms update
Consider adding
importFrom("stats", "binomial", "constrOptim", "glm", "lm.influence",
"make.link", "model.frame", "model.matrix", "na.omit",
"nlm", "pchisq", "pf", "printCoefmat", "pt", "qnorm",
"quantile", "scatter.smooth", "terms", "update")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Current CRAN status: NOTE: 12
Version: 2.4
Check: top-level files
Result: NOTE
Non-standard file/directory found at top level:
'beta'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.4
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
Warning: no function found corresponding to methods exports from 'ipdmeta' for: 'show'
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.4
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.4
Check: R code for possible problems
Result: NOTE
ipd.meta.power.base.function : power: no visible global function
definition for 'qnorm'
ipd.meta.power.base.function : power: no visible global function
definition for 'pnorm'
ipd.meta.power.base.function: no visible global function definition for
'qnorm'
ipdlme.hetero: no visible global function definition for 'new'
ipdlme.homo: no visible global function definition for 'new'
plot_ipdlme: no visible global function definition for 'par'
plot_ipdlme: no visible global function definition for 'abline'
plot_ipdlme: no visible global function definition for 'axis'
plot_ipdlme: no visible global function definition for 'segments'
confint,ipdlme: no visible global function definition for 'qt'
plot,ipdlme: no visible global function definition for 'par'
plot,ipdlme: no visible global function definition for 'abline'
plot,ipdlme: no visible global function definition for 'axis'
plot,ipdlme: no visible global function definition for 'segments'
summary,ipdlme: no visible global function definition for 'pt'
Undefined global functions or variables:
abline axis new par pnorm pt qnorm qt segments
Consider adding
importFrom("graphics", "abline", "axis", "par", "segments")
importFrom("methods", "new")
importFrom("stats", "pnorm", "pt", "qnorm", "qt")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Current CRAN status: ERROR: 1, NOTE: 4, OK: 7
Version: 2.1.7
Check: data for non-ASCII characters
Result: NOTE
Note: found 12 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 2.1.7
Check: examples
Result: ERROR
Running examples in ‘RISmed-Ex.R’ failed
The error most likely occurred in:
> ### Name: Cited
> ### Title: Number of citations
> ### Aliases: Cited
>
> ### ** Examples
>
> res <- EUtilsSummary("myeloma[ti]", mindate = "2002/01/01", maxdate = "2002/02/01", retmax = 5)
> Cited(res)
Warning in readLines(the_url) :
cannot open URL 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?retmode=xml&dbfrom=pubmed&id=11818668&cmd=neighbor': HTTP status was '429 Unknown Error'
Error in readLines(the_url) :
cannot open the connection to 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?retmode=xml&dbfrom=pubmed&id=11818668&cmd=neighbor'
Calls: Cited -> Cited -> sapply -> lapply -> FUN -> readLines
Execution halted
Flavor: r-oldrel-macos-x86_64