CRAN Package Check Results for Package rstanarm

Last updated on 2020-08-07 01:49:59 CEST.

Check Details

Version: 2.21.1
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 2.21.1
Check: installed package size
Result: NOTE
     installed size is 258.9Mb
     sub-directories of 1Mb or more:
     R 1.6Mb
     doc 4.5Mb
     libs 252.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 2.21.1
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘RcppParallel’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 2.21.1
Check: Rd cross-references
Result: NOTE
    Undeclared packages ‘gamm4’, ‘shiny’, ‘biglm’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.21.1
Flags: --no-examples --no-tests --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 24.7Mb
     sub-directories of 1Mb or more:
     R 1.6Mb
     doc 4.5Mb
     libs 18.0Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 2.21.1
Flags: --no-examples --no-tests --no-vignettes
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 2.21.1
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-patched-linux-x86_64

Version: 2.21.1
Check: examples
Result: ERROR
    Running examples in ‘rstanarm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: example_jm
    > ### Title: Example joint longitudinal and time-to-event model
    > ### Aliases: example_jm
    >
    > ### ** Examples
    >
    > # set.seed(123)
    > if (.Platform$OS.type != "windows" || .Platform$r_arch !="i386")
    + example_jm <-
    + stan_jm(formulaLong = logBili ~ year + (1 | id),
    + dataLong = pbcLong[1:101,],
    + formulaEvent = survival::Surv(futimeYears, death) ~ sex + trt,
    + dataEvent = pbcSurv[1:15,],
    + time_var = "year",
    + # this next line is only to keep the example small in size!
    + chains = 1, seed = 12345, iter = 100, refresh = 0)
    Loading required namespace: data.table
    Fitting a univariate joint model.
    
    Please note the warmup may be much slower than later iterations!
    [1] "Error in sampler$call_sampler(args_list[[i]]) : "
    [2] " empty_nested() must be true before calling recover_memory()"
    error occurred during calling the sampler; sampling not done
    Error in check_stanfit(stanfit) :
     Invalid stanfit object produced please report bug
    Calls: stan_jm -> stan_jm.fit -> check_stanfit
    Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 2.21.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/22s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.6/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
     #pragma clang diagnostic pop
     ^
     make: *** [filef5f453bb04a7.o] Interrupt: 2
     ── 1. Error: (unknown) (@test_stan_functions.R#70) ────────────────────────────
     $ operator is invalid for atomic vectors
     Backtrace:
     1. rstan::expose_stan_functions(stanc_ret, rebuild = TRUE, verbose = TRUE)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 1 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: (unknown) (@test_stan_functions.R#70)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 2.21.1
Check: for unstated dependencies in vignettes
Result: FAIL
Flavor: r-oldrel-macos-x86_64

Version: 2.21.1
Flags: --no-examples --no-tests --no-vignettes
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-windows-ix86+x86_64