Last updated on 2020-08-07 01:49:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.9 | 39.26 | 151.91 | 191.17 | OK | --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 0.0.9 | 30.35 | 113.41 | 143.76 | OK | --no-vignettes |
| r-devel-linux-x86_64-fedora-clang | 0.0.9 | 1034.96 | ERROR | --no-vignettes | ||
| r-devel-linux-x86_64-fedora-gcc | 0.0.9 | 1000.79 | ERROR | --no-vignettes | ||
| r-devel-windows-ix86+x86_64 | 0.0.9 | 75.00 | 215.00 | 290.00 | FAIL | |
| r-patched-linux-x86_64 | 0.0.9 | 35.80 | 147.08 | 182.88 | OK | --no-vignettes |
| r-release-linux-x86_64 | 0.0.9 | 38.02 | 149.37 | 187.39 | OK | --no-vignettes |
| r-release-macos-x86_64 | 0.0.9 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.0.9 | 70.00 | 321.00 | 391.00 | FAIL | |
| r-oldrel-macos-x86_64 | 0.0.9 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.0.9 | 42.00 | 0.00 | 42.00 | FAIL |
Version: 0.0.9
Flags: --no-vignettes
Check: tests
Result: ERROR
Running ‘rsolr_unit_tests.R’ [14m/90m]
Running the tests in ‘tests/rsolr_unit_tests.R’ failed.
Complete output:
> rsolr:::.test()
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Solr started at: http://localhost:8983/solr/techproducts
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Attaching package: 'rsolr'
The following object is masked from 'package:stats':
ftable
The following object is masked from 'package:base':
grouping
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Solr started at: http://localhost:8983/solr/Cars93
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Timing stopped at: 785.6 22.03 5332
Execution halted
rm: traversal failed: /tmp/Rtmp97Ea2F/working_dir/Rtmpac5DyZ: Too many open files
Warning message:
In solr$kill() : Test solr not running
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.9
Flags: --no-vignettes
Check: tests
Result: ERROR
Running ‘rsolr_unit_tests.R’ [14m/90m]
Running the tests in ‘tests/rsolr_unit_tests.R’ failed.
Complete output:
> rsolr:::.test()
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Solr started at: http://localhost:8983/solr/techproducts
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Attaching package: 'rsolr'
The following object is masked from 'package:stats':
ftable
The following object is masked from 'package:base':
grouping
Error in x$.self$finalize() : attempt to apply non-function
Error in x$.self$finalize() : attempt to apply non-function
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Solr started at: http://localhost:8983/solr/Cars93
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Timing stopped at: 760.1 18.94 5334
Error in file() : cannot open the connection
Calls: <Anonymous> -> <Anonymous> -> <Anonymous> -> portIsOpen -> file
In addition: Warning message:
In file() :
cannot open file '/tmp/RtmpSs3e2s/working_dir/Rtmp6vq9fK/Rf2b216c2eb3a75': Too many open files
Execution halted
sh: error while loading shared libraries: libtinfo.so.6: cannot open shared object file: Error 24
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.0.9
Check: tests
Result: ERROR
Running 'rsolr_unit_tests.R' [26s]
Running the tests in 'tests/rsolr_unit_tests.R' failed.
Complete output:
> rsolr:::.test()
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Attaching package: 'rsolr'
The following object is masked from 'package:stats':
ftable
The following object is masked from 'package:grDevices':
windows
The following object is masked from 'package:base':
grouping
Timing stopped at: 0.14 0 0.2
Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
Timing stopped at: 0 0 0.03
Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
Timing stopped at: 0.02 0 0.05
Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
Timing stopped at: 0.02 0 0.05
Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
Timing stopped at: 0 0.01 0.05
Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Solr started at: http://localhost:8983/solr/Cars93
Starting Solr...
Use options(verbose=TRUE) to diagnose any problems.
Solr started at: http://localhost:8983/solr/Cars93
RUNIT TEST PROTOCOL -- Tue Aug 04 10:59:46 2020
***********************************************
Number of test functions: 7
Number of errors: 5
Number of failures: 0
1 Test Suite :
rsolr RUnit Tests - 7 test functions, 5 errors, 0 failures
ERROR in test_SolrCore_accessors: Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
ERROR in test_SolrFrame_accessors: Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
ERROR in test_SolrList_accessors: Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
ERROR in test_SolrList_queries: Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
ERROR in test_SolrQuery: Error in value[[3L]](cond) : Failed to retrieve schema.
rsolr requires schema via REST or as XML from admin module.
Error from REST: Error in (function (cond) : error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found
Test files with failing tests
test_SolrCore.R
test_SolrCore_accessors
test_SolrFrame.R
test_SolrFrame_accessors
test_SolrList.R
test_SolrList_accessors
test_SolrList_queries
test_SolrQuery.R
test_SolrQuery
Error in get("testPackage", getNamespace("BiocGenerics"))("rsolr") :
unit tests failed for package rsolr
Calls: <Anonymous> -> <Anonymous>
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.0.9
Check: re-building of vignette outputs
Result: FAIL
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64
Version: 0.0.9
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘intro.Rnw’
...
5 -19 394.1379
6 16 287.6000
> with(defer(sr), S4Vectors::DataFrame(gain = arr_delay -
+ dep_delay, speed = distance/air_time * 60))
DataFrame with 336776 rows and 2 columns
When sourcing ‘intro.R’:
Error: error in evaluating the argument 'x' in selecting a method for function 'makeNakedCharacterMatrixForDisplay': '[' only accepts x[i] or x[] syntax
Execution halted
‘intro.Rnw’... failed
Flavor: r-release-macos-x86_64
Version: 0.0.9
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘intro.Rnw’ using Sweave
Warning: `...` is not empty.
We detected these problematic arguments:
* `needs_dots`
These dots only exist to allow future extensions and should be empty.
Did you misspecify an argument?
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Attaching package: ‘rsolr’
The following object is masked from ‘package:stats’:
ftable
The following object is masked from ‘package:base’:
grouping
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Warning in value[[3L]](cond) :
Luke request handler unavailable --- try 'includeStatic=TRUE'
Error: processing vignette 'intro.Rnw' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'makeNakedCharacterMatrixForDisplay': '[' only accepts x[i] or x[] syntax
--- failed re-building ‘intro.Rnw’
SUMMARY: processing the following file failed:
‘intro.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.0.9
Check: tests
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### Name: SolrList-class
> ### Title: SolrList
> ### Aliases: class:SolrList SolrList-class length,SolrList-method
> ### names,SolrList-method [<-,SolrList,ANY,ANY,ANY-method
> ### [[,SolrList,ANY-method [,SolrList-method [[,SolrList-method
> ### [[<-,SolrList-method unique,SolrList-method searchDocs
> ### searchDocs,Solr SolrList coerce,Solr,SolrList-method
> ### coerce,SolrList,DocCollection-method show,SolrList-method
> ### Keywords: methods classes
>
> ### ** Examples
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 4.24 0.2 4.55 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-oldrel-windows-ix86+x86_64