Last updated on 2020-08-07 01:50:31 CEST.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| calendar | 12 | ||
| cyclestreets | 12 | ||
| pct | 3 | 2 | 7 |
| stats19 | 4 | 8 | |
| stplanr | 3 | 4 | 5 |
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: WARN: 3, NOTE: 2, OK: 7
Version: 0.4.1
Check: data for non-ASCII characters
Result: NOTE
Note: found 11 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.4.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘cycling-potential-uk.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Linking to GEOS 3.6.4, GDAL 2.2.4, PROJ 5.2.0
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘cycling-potential-uk.Rmd’
--- re-building ‘pct-international.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 109-116 (pct-international.Rmd)
Error: processing vignette 'pct-international.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘pct-international.Rmd’
--- re-building ‘pct.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 169-175 (pct.Rmd)
Error: processing vignette 'pct.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘pct.Rmd’
--- re-building ‘pct_training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
tmap mode set to interactive viewing
Linking to GEOS 3.6.4, GDAL 2.2.4, PROJ 5.2.0
Legend for line widths not available in view mode.
Quitting from lines 113-133 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘pct_training.Rmd’
SUMMARY: processing the following files failed:
‘pct-international.Rmd’ ‘pct.Rmd’ ‘pct_training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.4.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘cycling-potential-uk.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Linking to GEOS 3.8.1, GDAL 3.1.1, PROJ 6.3.1
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘cycling-potential-uk.Rmd’
--- re-building ‘pct-international.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 109-116 (pct-international.Rmd)
Error: processing vignette 'pct-international.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘pct-international.Rmd’
--- re-building ‘pct.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 169-175 (pct.Rmd)
Error: processing vignette 'pct.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘pct.Rmd’
--- re-building ‘pct_training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
tmap mode set to interactive viewing
Linking to GEOS 3.8.1, GDAL 3.1.1, PROJ 6.3.1
Legend for line widths not available in view mode.
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Quitting from lines 113-133 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘pct_training.Rmd’
SUMMARY: processing the following files failed:
‘pct-international.Rmd’ ‘pct.Rmd’ ‘pct_training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.4.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘cycling-potential-uk.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘cycling-potential-uk.Rmd’
--- re-building ‘pct-international.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 109-116 (pct-international.Rmd)
Error: processing vignette 'pct-international.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘pct-international.Rmd’
--- re-building ‘pct.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 169-175 (pct.Rmd)
Error: processing vignette 'pct.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘pct.Rmd’
--- re-building ‘pct_training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
tmap mode set to interactive viewing
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
Legend for line widths not available in view mode.
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Quitting from lines 113-133 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘pct_training.Rmd’
SUMMARY: processing the following files failed:
‘pct-international.Rmd’ ‘pct.Rmd’ ‘pct_training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: WARN: 4, OK: 8
Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'blog.Rmd' using rmarkdown
Files identified: dftRoadSafetyData_Accidents_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
Data saved at /tmp/RtmpvLo8iV/dftRoadSafetyData_Accidents_2017/Acc.csv
Reading in:
/tmp/RtmpvLo8iV/dftRoadSafetyData_Accidents_2017/Acc.csv
date and time columns present, creating formatted datetime column
Linking to GEOS 3.8.1, GDAL 3.1.2, PROJ 7.1.0
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Files identified: dftRoadSafetyData_Casualties_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Data saved at /tmp/RtmpvLo8iV/dftRoadSafetyData_Casualties_2017/Cas.csv
Files identified: dftRoadSafetyData_Vehicles_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
Data saved at /tmp/RtmpvLo8iV/dftRoadSafetyData_Vehicles_2017/Veh.csv
`summarise()` ungrouping output (override with `.groups` argument)
Joining, by = "accident_index"
Error: processing vignette 'blog.Rmd' failed with diagnostics:
invalid multibyte string, element 1
--- failed re-building 'blog.Rmd'
--- re-building 'stats19-training-setup.Rmd' using rmarkdown
--- finished re-building 'stats19-training-setup.Rmd'
--- re-building 'stats19-training.Rmd' using rmarkdown
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[crashes_sf[2, ], ], col = "blue", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[zones_containing_crashes, ], col = "yellow", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
tmap mode set to plotting
--- finished re-building 'stats19-training.Rmd'
--- re-building 'stats19-vehicles.Rmd' using rmarkdown
Data provided under OGL v3.0. Cite the source and link to:
www.nationalarchives.gov.uk/doc/open-government-licence/version/3/
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2018.csv'
Content type 'application/octet-stream' length 14803084 bytes (14.1 MB)
==================================================
downloaded 14.1 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2018.csv'
Content type 'application/octet-stream' length 16827907 bytes (16.0 MB)
==================================================
downloaded 16.0 MB
--- finished re-building 'stats19-vehicles.Rmd'
--- re-building 'stats19.Rmd' using rmarkdown
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
`summarise()` ungrouping output (override with `.groups` argument)
Joining, by = "accident_index"
--- finished re-building 'stats19.Rmd'
SUMMARY: processing the following file failed:
'blog.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘blog.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Files identified: dftRoadSafetyData_Accidents_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
Data saved at /tmp/RtmpoeaOpC/working_dir/Rtmp_Yaizl/dftRoadSafetyData_Accidents_2017/Acc.csv
Reading in:
/tmp/RtmpoeaOpC/working_dir/Rtmp_Yaizl/dftRoadSafetyData_Accidents_2017/Acc.csv
date and time columns present, creating formatted datetime column
Linking to GEOS 3.6.4, GDAL 2.2.4, PROJ 5.2.0
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Files identified: dftRoadSafetyData_Casualties_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Data saved at /tmp/RtmpoeaOpC/working_dir/Rtmp_Yaizl/dftRoadSafetyData_Casualties_2017/Cas.csv
Files identified: dftRoadSafetyData_Vehicles_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
Data saved at /tmp/RtmpoeaOpC/working_dir/Rtmp_Yaizl/dftRoadSafetyData_Vehicles_2017/Veh.csv
`summarise()` ungrouping output (override with `.groups` argument)
Joining, by = "accident_index"
--- finished re-building ‘blog.Rmd’
--- re-building ‘stats19-training-setup.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stats19-training-setup.Rmd’
--- re-building ‘stats19-training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[crashes_sf[2, ], ], col = "blue", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[zones_containing_crashes, ], col = "yellow", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Quitting from lines 961-970 (stats19-training.Rmd)
Error: processing vignette 'stats19-training.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘stats19-training.Rmd’
--- re-building ‘stats19-vehicles.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Data provided under OGL v3.0. Cite the source and link to:
www.nationalarchives.gov.uk/doc/open-government-licence/version/3/
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2018.csv'
Content type 'application/octet-stream' length 14803084 bytes (14.1 MB)
==================================================
downloaded 14.1 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2018.csv'
Content type 'application/octet-stream' length 16827907 bytes (16.0 MB)
==================================================
downloaded 16.0 MB
--- finished re-building ‘stats19-vehicles.Rmd’
--- re-building ‘stats19.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
`summarise()` ungrouping output (override with `.groups` argument)
Joining, by = "accident_index"
--- finished re-building ‘stats19.Rmd’
SUMMARY: processing the following file failed:
‘stats19-training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘blog.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Files identified: dftRoadSafetyData_Accidents_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
Data saved at /Volumes/Temp/tmp/RtmpEzykDu/dftRoadSafetyData_Accidents_2017/Acc.csv
Reading in:
/Volumes/Temp/tmp/RtmpEzykDu/dftRoadSafetyData_Accidents_2017/Acc.csv
date and time columns present, creating formatted datetime column
Linking to GEOS 3.8.1, GDAL 3.1.1, PROJ 6.3.1
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Files identified: dftRoadSafetyData_Casualties_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Data saved at /Volumes/Temp/tmp/RtmpEzykDu/dftRoadSafetyData_Casualties_2017/Cas.csv
Files identified: dftRoadSafetyData_Vehicles_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
Data saved at /Volumes/Temp/tmp/RtmpEzykDu/dftRoadSafetyData_Vehicles_2017/Veh.csv
`summarise()` ungrouping output (override with `.groups` argument)
Joining, by = "accident_index"
--- finished re-building ‘blog.Rmd’
--- re-building ‘stats19-training-setup.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stats19-training-setup.Rmd’
--- re-building ‘stats19-training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[crashes_sf[2, ], ], col = "blue", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[zones_containing_crashes, ], col = "yellow", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Quitting from lines 961-970 (stats19-training.Rmd)
Error: processing vignette 'stats19-training.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘stats19-training.Rmd’
--- re-building ‘stats19-vehicles.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Data provided under OGL v3.0. Cite the source and link to:
www.nationalarchives.gov.uk/doc/open-government-licence/version/3/
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2018.csv'
Content type 'application/octet-stream' length 14803084 bytes (14.1 MB)
==================================================
downloaded 14.1 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2018.csv'
Content type 'application/octet-stream' length 16827907 bytes (16.0 MB)
==================================================
downloaded 16.0 MB
--- finished re-building ‘stats19-vehicles.Rmd’
--- re-building ‘stats19.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
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downloaded 1.1 MB
`summarise()` ungrouping output (override with `.groups` argument)
Joining, by = "accident_index"
--- finished re-building ‘stats19.Rmd’
SUMMARY: processing the following file failed:
‘stats19-training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘blog.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Files identified: dftRoadSafetyData_Accidents_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
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downloaded 3.8 MB
Data saved at /tmp/RtmpWDlBpr/dftRoadSafetyData_Accidents_2017/Acc.csv
Reading in:
/tmp/RtmpWDlBpr/dftRoadSafetyData_Accidents_2017/Acc.csv
date and time columns present, creating formatted datetime column
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Files identified: dftRoadSafetyData_Casualties_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Data saved at /tmp/RtmpWDlBpr/dftRoadSafetyData_Casualties_2017/Cas.csv
Files identified: dftRoadSafetyData_Vehicles_2017.zip
http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip
Attempt downloading from:
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
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downloaded 2.5 MB
Data saved at /tmp/RtmpWDlBpr/dftRoadSafetyData_Vehicles_2017/Veh.csv
Joining, by = "accident_index"
--- finished re-building ‘blog.Rmd’
--- re-building ‘stats19-training-setup.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stats19-training-setup.Rmd’
--- re-building ‘stats19-training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'lubridate'
The following object is masked from 'package:base':
date
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[crashes_sf[2, ], ], col = "blue", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Warning in plot.sf(zones[zones_containing_crashes, ], col = "yellow", add = TRUE) :
ignoring all but the first attribute
although coordinates are longitude/latitude, st_intersects assumes that they are planar
although coordinates are longitude/latitude, st_intersects assumes that they are planar
Quitting from lines 961-970 (stats19-training.Rmd)
Error: processing vignette 'stats19-training.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘stats19-training.Rmd’
--- re-building ‘stats19-vehicles.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Data provided under OGL v3.0. Cite the source and link to:
www.nationalarchives.gov.uk/doc/open-government-licence/version/3/
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2018.csv'
Content type 'application/octet-stream' length 14803084 bytes (14.1 MB)
==================================================
downloaded 14.1 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2018.csv'
Content type 'application/octet-stream' length 16827907 bytes (16.0 MB)
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downloaded 16.0 MB
--- finished re-building ‘stats19-vehicles.Rmd’
--- re-building ‘stats19.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Accidents_2017.zip'
Content type 'application/x-zip-compressed' length 3997883 bytes (3.8 MB)
==================================================
downloaded 3.8 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Vehicles_2017.zip'
Content type 'application/x-zip-compressed' length 2584589 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip'
Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Joining, by = "accident_index"
--- finished re-building ‘stats19.Rmd’
SUMMARY: processing the following file failed:
‘stats19-training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: WARN: 3, NOTE: 4, OK: 5
Version: 0.6.2
Check: installed package size
Result: NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
doc 2.6Mb
libs 1.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.6.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘stplanr-od.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 213-217 (stplanr-od.Rmd)
Error: processing vignette 'stplanr-od.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘stplanr-od.Rmd’
--- re-building ‘stplanr-paper.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-paper.Rmd’
--- re-building ‘stplanr-parallel.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-parallel.Rmd’
--- re-building ‘stplanr-route-nets.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Linking to GEOS 3.6.4, GDAL 2.2.4, PROJ 5.2.0
2020-07-26 13:19:25 constructing segments
2020-07-26 13:19:25 building geometry
2020-07-26 13:19:25 simplifying geometry
2020-07-26 13:19:25 aggregating flows
2020-07-26 13:19:26 rejoining segments into linestrings
--- finished re-building ‘stplanr-route-nets.Rmd’
--- re-building ‘stplanr-routing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-routing.Rmd’
--- re-building ‘stplanr.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr.Rmd’
SUMMARY: processing the following file failed:
‘stplanr-od.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.6.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘stplanr-od.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 213-217 (stplanr-od.Rmd)
Error: processing vignette 'stplanr-od.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘stplanr-od.Rmd’
--- re-building ‘stplanr-paper.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-paper.Rmd’
--- re-building ‘stplanr-parallel.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-parallel.Rmd’
--- re-building ‘stplanr-route-nets.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Linking to GEOS 3.8.1, GDAL 3.1.1, PROJ 6.3.1
2020-07-16 12:13:30 constructing segments
2020-07-16 12:13:30 building geometry
2020-07-16 12:13:30 simplifying geometry
2020-07-16 12:13:30 aggregating flows
2020-07-16 12:13:30 rejoining segments into linestrings
--- finished re-building ‘stplanr-route-nets.Rmd’
--- re-building ‘stplanr-routing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-routing.Rmd’
--- re-building ‘stplanr.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr.Rmd’
SUMMARY: processing the following file failed:
‘stplanr-od.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.6.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘stplanr-od.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 213-217 (stplanr-od.Rmd)
Error: processing vignette 'stplanr-od.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘stplanr-od.Rmd’
--- re-building ‘stplanr-paper.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-paper.Rmd’
--- re-building ‘stplanr-parallel.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-parallel.Rmd’
--- re-building ‘stplanr-route-nets.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Linking to GEOS 3.7.2, GDAL 2.4.2, PROJ 5.2.0
2020-07-09 09:54:13 constructing segments
2020-07-09 09:54:13 building geometry
2020-07-09 09:54:13 simplifying geometry
2020-07-09 09:54:13 aggregating flows
2020-07-09 09:54:13 rejoining segments into linestrings
--- finished re-building ‘stplanr-route-nets.Rmd’
--- re-building ‘stplanr-routing.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr-routing.Rmd’
--- re-building ‘stplanr.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘stplanr.Rmd’
SUMMARY: processing the following file failed:
‘stplanr-od.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64