CRAN Package Check Results for Package rGEDI

Last updated on 2020-08-07 01:49:58 CEST.

Check Details

Version: 0.1.8
Check: installed package size
Result: NOTE
     installed size is 5.6Mb
     sub-directories of 1Mb or more:
     doc 1.2Mb
     extdata 2.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.8
Check: examples
Result: ERROR
    Running examples in ‘rGEDI-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: clipLevel1BGeo
    > ### Title: Clip GEDI Full Waveform Geolocations by Coordinates
    > ### Aliases: clipLevel1BGeo
    >
    > ### ** Examples
    >
    > # Specifying the path to GEDI level1B data (zip file)
    > outdir = tempdir()
    > level1B_fp_zip <- system.file("extdata",
    + "GEDI01_B_2019108080338_O01964_T05337_02_003_01_sub.zip",
    + package="rGEDI")
    >
    > # Unzipping GEDI level1B data
    > level1Bpath <- unzip(level1B_fp_zip,exdir = outdir)
    >
    > # Reading GEDI level1B data (h5 file)
    > level1b<-readLevel1B(level1Bpath=level1Bpath)
    >
    > # Extracting GEDI Full Waveform Geolocations
    > level1bGeo<-getLevel1BGeo(level1b)
    
     |
     | | 0%
     |
     |= | 2%Error in self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, :
     HDF5-API Errors:
     error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
     class: HDF5
     major: Invalid arguments to routine
     minor: Inappropriate type
    Calls: getLevel1BGeo ... assign -> [ -> [.H5D -> <Anonymous> -> <Anonymous> -> .Call
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘tutorial.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    trying URL 'https://github.com/carlos-alberto-silva/rGEDI/releases/download/datasets/examples.zip'
    Content type 'application/octet-stream' length 13208640 bytes (12.6 MB)
    ==================================================
    downloaded 12.6 MB
    
    Quitting from lines 140-142 (tutorial.Rmd)
    Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
    HDF5-API Errors:
     error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
     class: HDF5
     major: Invalid arguments to routine
     minor: Inappropriate type
    
    --- failed re-building ‘tutorial.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘tutorial.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.8
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'tutorial.Rmd' using rmarkdown
    trying URL 'https://github.com/carlos-alberto-silva/rGEDI/releases/download/datasets/examples.zip'
    Content type 'application/octet-stream' length 13208640 bytes (12.6 MB)
    ==================================================
    downloaded 12.6 MB
    
    Warning in par(oldpar) : graphical parameter "cin" cannot be set
    Warning in par(oldpar) : graphical parameter "cra" cannot be set
    Warning in par(oldpar) : graphical parameter "csi" cannot be set
    Warning in par(oldpar) : graphical parameter "cxy" cannot be set
    Warning in par(oldpar) : graphical parameter "din" cannot be set
    Warning in par(oldpar) : graphical parameter "page" cannot be set
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     graphical parameter "type" is obsolete
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     graphical parameter "type" is obsolete
    Loading required package: sp
    Loading required namespace: rgeos
    Quitting from lines 524-549 (tutorial.Rmd)
    Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
    package 'lattice' 0.20.38 was found, but >= 0.20.41 is required by 'rasterVis'
    --- failed re-building 'tutorial.Rmd'
    
    SUMMARY: processing the following file failed:
     'tutorial.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64