CRAN Package Check Results for Package psy

Last updated on 2020-08-07 01:49:56 CEST.

Check Details

Version: 1.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     'mtmm'
    Found the platform-specific device:
     'x11'
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    ckappa: no visible global function definition for 'na.omit'
    cronbach: no visible global function definition for 'na.omit'
    cronbach: no visible binding for global variable 'var'
    cronbach: no visible global function definition for 'var'
    fpca: no visible global function definition for 'model.extract'
    fpca: no visible global function definition for 'na.omit'
    fpca: no visible global function definition for 'var'
    fpca: no visible global function definition for 'cor'
    fpca: no visible global function definition for 'par'
    fpca: no visible global function definition for 'lines'
    fpca: no visible global function definition for 'symbols'
    fpca: no visible global function definition for 'text'
    icc: no visible global function definition for 'na.omit'
    icc: no visible global function definition for 'anova'
    icc: no visible global function definition for 'lm'
    mdspca: no visible global function definition for 'na.omit'
    mdspca: no visible global function definition for 'sd'
    mdspca: no visible global function definition for 'cor'
    mdspca: no visible global function definition for 'par'
    mdspca: no visible global function definition for 'lines'
    mdspca: no visible global function definition for 'symbols'
    mdspca: no visible global function definition for 'text'
    mtmm: no visible global function definition for 'par'
    mtmm: no visible global function definition for 'na.omit'
    mtmm: no visible global function definition for 'cor'
    mtmm: no visible global function definition for 'boxplot'
    mtmm: no visible global function definition for 'stripchart'
    mtmm: no visible global function definition for 'points'
    mtmm: no visible global function definition for 'median'
    mtmm: no visible global function definition for 'reshape'
    mtmm: no visible global function definition for 'x11'
    mtmm: no visible global function definition for 'abline'
    scree.plot: no visible global function definition for 'na.omit'
    scree.plot: no visible global function definition for 'cor'
    scree.plot: no visible global function definition for 'cov'
    scree.plot: no visible global function definition for 'lines'
    scree.plot: no visible global function definition for 'rnorm'
    scree.plot: no visible global function definition for 'points'
    sphpca: no visible global function definition for 'na.omit'
    sphpca: no visible global function definition for 'cor'
    sphpca: no visible global function definition for 'optim'
    sphpca: no visible global function definition for 'lm'
    sphpca: no visible global function definition for 'par'
    sphpca: no visible global function definition for 'lines'
    sphpca: no visible global function definition for 'symbols'
    sphpca: no visible global function definition for 'text'
    wkappa: no visible global function definition for 'na.omit'
    Undefined global functions or variables:
     abline anova boxplot cor cov lines lm median model.extract na.omit
     optim par points reshape rnorm sd stripchart symbols text var x11
    Consider adding
     importFrom("grDevices", "x11")
     importFrom("graphics", "abline", "boxplot", "lines", "par", "points",
     "stripchart", "symbols", "text")
     importFrom("stats", "anova", "cor", "cov", "lm", "median",
     "model.extract", "na.omit", "optim", "reshape", "rnorm",
     "sd", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1
Check: Rd line widths
Result: NOTE
    Rd file 'ckappa.Rd':
     \examples lines wider than 100 characters:
     #boot.ci(res,type="bca") # adjusted bootstrap percentile (BCa) confidence interval (better)
    
    Rd file 'fpca.Rd':
     \usage lines wider than 90 characters:
     fpca(formula=NULL,y=NULL, x=NULL, data, cx=0.75, pvalues="No", partial="Yes", input="data", contraction="No", sample.size=1)
     \examples lines wider than 100 characters:
     fpca(Paradoxical.sleep~Body.weight+Brain.weight+Slow.wave.sleep+Maximum.life.span+Gestation.time+Predation+Sleep.exposure+Danger,data=s ... [TRUNCATED]
     fpca(y="Paradoxical.sleep",x=c("Body.weight","Brain.weight","Slow.wave.sleep","Maximum.life.span","Gestation.time","Predation","Sleep.e ... [TRUNCATED]
     fpca(Paradoxical.sleep~Body.weight+Brain.weight+Slow.wave.sleep+Maximum.life.span+Gestation.time+Predation+Sleep.exposure+Danger,
     fpca(Paradoxical.sleep~Body.weight+Brain.weight+Slow.wave.sleep+Maximum.life.span+Gestation.time+Predation+Sleep.exposure+Danger,
     fpca(Paradoxical.sleep~Body.weight+Brain.weight+Slow.wave.sleep+Maximum.life.span+Gestation.time+Predation+Sleep.exposure+Danger,
    
    Rd file 'lkappa.Rd':
     \examples lines wider than 100 characters:
     #boot.ci(res,type="bca") # adjusted bootstrap percentile (BCa) confidence interval (better)
    
    Rd file 'mdspca.Rd':
     \usage lines wider than 90 characters:
     mdspca(datafile, supvar="no", supsubj="no", namesupvar=colnames(supvar,do.NULL=FALSE), namesupsubj=colnames(supsubj, do.NULL=FALSE), di ... [TRUNCATED]
     \examples lines wider than 100 characters:
     mdspca(sleep[,c(2:5,7:11)],supvar=sleep[,6],namesupvar="Total.sleep",supsubj=sleep[,1],namesupsubj="",cx=0.5)
    
    Rd file 'mtmm.Rd':
     \examples lines wider than 100 characters:
     # Boxplots of the distributions of the Pearson's correlations between total score of subscale i and the items of subscale j
    
    Rd file 'sphpca.Rd':
     \usage lines wider than 90 characters:
     sphpca(datafile, h=0, v=0, f=0, cx=0.75, nbsphere=2, back=FALSE, input="data",method="approx", maxiter=500, output=FALSE)
     \examples lines wider than 100 characters:
     ## idem, but optimizes the representation of correlations between variables with distances between points
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    ckappa: no visible global function definition for 'na.omit'
    cronbach: no visible global function definition for 'na.omit'
    cronbach: no visible binding for global variable 'var'
    cronbach: no visible global function definition for 'var'
    fpca: no visible global function definition for 'model.extract'
    fpca: no visible global function definition for 'na.omit'
    fpca: no visible global function definition for 'var'
    fpca: no visible global function definition for 'cor'
    fpca: no visible global function definition for 'par'
    fpca: no visible global function definition for 'lines'
    fpca: no visible global function definition for 'symbols'
    fpca: no visible global function definition for 'text'
    icc: no visible global function definition for 'na.omit'
    icc: no visible global function definition for 'anova'
    icc: no visible global function definition for 'lm'
    mdspca: no visible global function definition for 'na.omit'
    mdspca: no visible global function definition for 'sd'
    mdspca: no visible global function definition for 'cor'
    mdspca: no visible global function definition for 'par'
    mdspca: no visible global function definition for 'lines'
    mdspca: no visible global function definition for 'symbols'
    mdspca: no visible global function definition for 'text'
    mtmm: no visible global function definition for 'par'
    mtmm: no visible global function definition for 'na.omit'
    mtmm: no visible global function definition for 'cor'
    mtmm: no visible global function definition for 'boxplot'
    mtmm: no visible global function definition for 'stripchart'
    mtmm: no visible global function definition for 'points'
    mtmm: no visible global function definition for 'median'
    mtmm: no visible global function definition for 'reshape'
    mtmm: no visible global function definition for 'x11'
    mtmm: no visible global function definition for 'abline'
    scree.plot: no visible global function definition for 'na.omit'
    scree.plot: no visible global function definition for 'cor'
    scree.plot: no visible global function definition for 'cov'
    scree.plot: no visible global function definition for 'lines'
    scree.plot: no visible global function definition for 'rnorm'
    scree.plot: no visible global function definition for 'points'
    sphpca: no visible global function definition for 'na.omit'
    sphpca: no visible global function definition for 'cor'
    sphpca: no visible global function definition for 'optim'
    sphpca: no visible global function definition for 'lm'
    sphpca: no visible global function definition for 'par'
    sphpca: no visible global function definition for 'lines'
    sphpca: no visible global function definition for 'symbols'
    sphpca: no visible global function definition for 'text'
    wkappa: no visible global function definition for 'na.omit'
    Undefined global functions or variables:
     abline anova boxplot cor cov lines lm median model.extract na.omit
     optim par points reshape rnorm sd stripchart symbols text var x11
    Consider adding
     importFrom("grDevices", "x11")
     importFrom("graphics", "abline", "boxplot", "lines", "par", "points",
     "stripchart", "symbols", "text")
     importFrom("stats", "anova", "cor", "cov", "lm", "median",
     "model.extract", "na.omit", "optim", "reshape", "rnorm",
     "sd", "var")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    ckappa: no visible global function definition for ‘na.omit’
    cronbach: no visible global function definition for ‘na.omit’
    cronbach: no visible binding for global variable ‘var’
    cronbach: no visible global function definition for ‘var’
    fpca: no visible global function definition for ‘model.extract’
    fpca: no visible global function definition for ‘na.omit’
    fpca: no visible global function definition for ‘var’
    fpca: no visible global function definition for ‘cor’
    fpca: no visible global function definition for ‘par’
    fpca: no visible global function definition for ‘plot’
    fpca: no visible global function definition for ‘lines’
    fpca: no visible global function definition for ‘symbols’
    fpca: no visible global function definition for ‘text’
    icc: no visible global function definition for ‘na.omit’
    icc: no visible global function definition for ‘anova’
    icc: no visible global function definition for ‘lm’
    mdspca: no visible global function definition for ‘na.omit’
    mdspca: no visible global function definition for ‘sd’
    mdspca: no visible global function definition for ‘cor’
    mdspca: no visible global function definition for ‘par’
    mdspca: no visible global function definition for ‘plot’
    mdspca: no visible global function definition for ‘lines’
    mdspca: no visible global function definition for ‘symbols’
    mdspca: no visible global function definition for ‘text’
    mtmm: no visible global function definition for ‘par’
    mtmm: no visible global function definition for ‘na.omit’
    mtmm: no visible global function definition for ‘cor’
    mtmm: no visible global function definition for ‘boxplot’
    mtmm: no visible global function definition for ‘stripchart’
    mtmm: no visible global function definition for ‘points’
    mtmm: no visible global function definition for ‘median’
    mtmm: no visible global function definition for ‘reshape’
    mtmm: no visible global function definition for ‘x11’
    mtmm: no visible global function definition for ‘abline’
    scree.plot: no visible global function definition for ‘na.omit’
    scree.plot: no visible global function definition for ‘cor’
    scree.plot: no visible global function definition for ‘cov’
    scree.plot: no visible global function definition for ‘plot’
    scree.plot: no visible global function definition for ‘lines’
    scree.plot: no visible global function definition for ‘rnorm’
    scree.plot: no visible global function definition for ‘points’
    sphpca: no visible global function definition for ‘na.omit’
    sphpca: no visible global function definition for ‘cor’
    sphpca: no visible global function definition for ‘optim’
    sphpca: no visible global function definition for ‘lm’
    sphpca: no visible global function definition for ‘par’
    sphpca: no visible global function definition for ‘plot’
    sphpca: no visible global function definition for ‘lines’
    sphpca: no visible global function definition for ‘symbols’
    sphpca: no visible global function definition for ‘text’
    wkappa: no visible global function definition for ‘na.omit’
    Undefined global functions or variables:
     abline anova boxplot cor cov lines lm median model.extract na.omit
     optim par plot points reshape rnorm sd stripchart symbols text var
     x11
    Consider adding
     importFrom("grDevices", "x11")
     importFrom("graphics", "abline", "boxplot", "lines", "par", "plot",
     "points", "stripchart", "symbols", "text")
     importFrom("stats", "anova", "cor", "cov", "lm", "median",
     "model.extract", "na.omit", "optim", "reshape", "rnorm",
     "sd", "var")
    to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64