Last updated on 2020-08-07 01:50:29 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| dynamicTreeCut | 12 | ||
| flashClust | 12 | ||
| moduleColor | 12 | ||
| PropClust | 12 | ||
| randomGLM | 12 | ||
| WGCNA | 1 | 2 | 9 |
Current CRAN status: OK: 12
Current CRAN status: NOTE: 12
Version: 1.01-2
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.01-2
Check: compiled code
Result: NOTE
File ‘flashClust/libs/flashClust.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 12
Version: 1.08-3
Check: R code for possible problems
Result: NOTE
.clustOrder: no visible global function definition for 'hclust'
.clustOrder: no visible global function definition for 'as.dist'
consensusMEDissimilarity: no visible global function definition for
'cor'
mergeCloseModules: no visible global function definition for 'cor'
mergeCloseModules: no visible global function definition for 'hclust'
mergeCloseModules: no visible global function definition for 'as.dist'
moduleEigengenes: no visible global function definition for 'cor'
moduleEigengenes: no visible global function definition for 'cov'
moduleNumber: no visible global function definition for 'cutree'
orderMEs: no visible global function definition for 'cor'
orderMEs: no visible global function definition for 'as.dist'
plotHclustColors: no visible global function definition for 'barplot'
plotHclustColors: no visible global function definition for 'strwidth'
plotHclustColors: no visible global function definition for 'rect'
plotHclustColors: no visible global function definition for 'text'
plotHclustColors: no visible global function definition for 'lines'
Undefined global functions or variables:
as.dist barplot cor cov cutree hclust lines rect strwidth text
Consider adding
importFrom("graphics", "barplot", "lines", "rect", "strwidth", "text")
importFrom("stats", "as.dist", "cor", "cov", "cutree", "hclust")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 12
Version: 1.02-1
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.02-1
Check: R code for possible problems
Result: NOTE
.disableThreads: no visible global function definition for
'stopCluster'
.enableThreads: no visible global function definition for 'detectCores'
.enableThreads: no visible global function definition for
'makePSOCKcluster'
.enableThreads: no visible global function definition for
'clusterExport'
.enableThreads: no visible global function definition for 'clusterCall'
.forwardSelection: no visible binding for global variable 'var'
.forwardSelection: no visible global function definition for 'glm'
.forwardSelection: no visible global function definition for 'formula'
.forwardSelection: no visible global function definition for 'binomial'
.forwardSelection: no visible global function definition for 'lm'
.forwardSelection: no visible global function definition for 'predict'
.predict.internal: no visible global function definition for 'predict'
randomGLM: no visible binding for global variable 'cor'
randomGLM: no visible binding for global variable 'sd'
randomGLM: no visible global function definition for 'var'
thinRandomGLM: no visible global function definition for 'glm'
thinRandomGLM: no visible global function definition for 'binomial'
thinRandomGLM: no visible global function definition for 'lm'
Undefined global functions or variables:
binomial clusterCall clusterExport cor detectCores formula glm lm
makePSOCKcluster predict sd stopCluster var
Consider adding
importFrom("stats", "binomial", "cor", "formula", "glm", "lm",
"predict", "sd", "var")
to your NAMESPACE file.
Found the following assignments to the global environment:
File 'randomGLM/R/randomGLM.R':
assign(".randomGLMparallelCluster", cluster, pos = ".GlobalEnv")
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.02-1
Check: Rd line widths
Result: NOTE
Rd file 'predict.randomGLM.Rd':
\examples lines wider than 100 characters:
RGLM = randomGLM(xTrain, yTrain, nCandidateCovariates=ncol(xTrain), nBags=30, keepModels = TRUE, nThreads = 1)
Rd file 'randomGLM.Rd':
\usage lines wider than 90 characters:
# Multi-level classification options - only apply to classification with multi-level response
Rd file 'thinRandomGLM.Rd':
\examples lines wider than 100 characters:
RGLM = randomGLM(xTrain, yTrain, nCandidateCovariates=ncol(xTrain), nBags=30, keepModels = TRUE, nThreads = 1)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.02-1
Check: Rd cross-references
Result: NOTE
Undeclared package ‘WGCNA’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.02-1
Check: R code for possible problems
Result: NOTE
.disableThreads: no visible global function definition for
‘stopCluster’
.enableThreads: no visible global function definition for ‘detectCores’
.enableThreads: no visible global function definition for
‘makePSOCKcluster’
.enableThreads: no visible global function definition for
‘clusterExport’
.enableThreads: no visible global function definition for ‘clusterCall’
.forwardSelection: no visible binding for global variable ‘var’
.forwardSelection: no visible global function definition for ‘glm’
.forwardSelection: no visible global function definition for ‘formula’
.forwardSelection: no visible global function definition for ‘binomial’
.forwardSelection: no visible global function definition for ‘lm’
.forwardSelection: no visible global function definition for ‘predict’
.predict.internal: no visible global function definition for ‘predict’
randomGLM: no visible binding for global variable ‘cor’
randomGLM: no visible binding for global variable ‘sd’
randomGLM: no visible global function definition for ‘var’
thinRandomGLM: no visible global function definition for ‘glm’
thinRandomGLM: no visible global function definition for ‘binomial’
thinRandomGLM: no visible global function definition for ‘lm’
Undefined global functions or variables:
binomial clusterCall clusterExport cor detectCores formula glm lm
makePSOCKcluster predict sd stopCluster var
Consider adding
importFrom("stats", "binomial", "cor", "formula", "glm", "lm",
"predict", "sd", "var")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.02-1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘WGCNA’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 2, OK: 9
Version: 1.69
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
R 1.2Mb
libs 2.2Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64
Version: 1.69
Check: package dependencies
Result: ERROR
Package required but not available: ‘GO.db’
Packages suggested but not available for checking:
'org.Hs.eg.db', 'org.Mm.eg.db'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64