Last updated on 2020-08-07 01:50:28 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| Seurat | 1 | 11 |
Current CRAN status: ERROR: 1, NOTE: 11
Version: 3.2.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'loomR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.2.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: 'loomR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.2.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'loomR', 'MAST', 'monocle'
Imports includes 39 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.2.0
Check: installed package size
Result: NOTE
installed size is 9.6Mb
sub-directories of 1Mb or more:
R 1.2Mb
libs 7.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 3.2.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'loomR', 'MAST', 'monocle'
Flavors: r-devel-linux-x86_64-fedora-gcc, r-release-macos-x86_64
Version: 3.2.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'loomR', 'monocle'
Flavor: r-patched-solaris-x86
Version: 3.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/117s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Seurat)
>
> test_check("Seurat")
── 1. Error: (unknown) (@test_load_10X.R#34) ──────────────────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. Seurat::Load10X_Spatial(data.dir = "../testdata/visium")
2. Seurat::Read10X_h5(...)
4. hdf5r:::`[.H5D`(...)
5. x$read(...)
6. self$read_low_level(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 418 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: (unknown) (@test_load_10X.R#34)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 3.2.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'loomR', 'SingleCellExperiment', 'MAST', 'monocle'
Flavor: r-oldrel-macos-x86_64