Last updated on 2020-08-07 01:49:50 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 2.2.2 | 59.74 | 179.04 | 238.78 | OK | |
r-devel-linux-x86_64-debian-gcc | 2.2.2 | 49.40 | 132.02 | 181.42 | OK | |
r-devel-linux-x86_64-fedora-clang | 2.2.2 | 311.00 | OK | |||
r-devel-linux-x86_64-fedora-gcc | 2.2.2 | 302.21 | OK | |||
r-devel-windows-ix86+x86_64 | 2.2.2 | 155.00 | 339.00 | 494.00 | OK | |
r-patched-linux-x86_64 | 2.2.2 | 54.26 | 178.74 | 233.00 | OK | |
r-patched-solaris-x86 | 2.2.2 | 325.90 | OK | |||
r-release-linux-x86_64 | 2.2.2 | 52.30 | 177.74 | 230.04 | OK | |
r-release-macos-x86_64 | 2.2.2 | OK | ||||
r-release-windows-ix86+x86_64 | 2.2.2 | 156.00 | 349.00 | 505.00 | OK | |
r-oldrel-macos-x86_64 | 2.2.2 | ERROR | ||||
r-oldrel-windows-ix86+x86_64 | 2.2.2 | 85.00 | 163.00 | 248.00 | ERROR |
Version: 2.2.2
Check: examples
Result: ERROR
Running examples in ‘lefko3-Ex.R’ failed
The error most likely occurred in:
> ### Name: cypdata
> ### Title: Demographic Dataset of _Cypripedium candidum_ Population, in
> ### Horizontal Format
> ### Aliases: cypdata
> ### Keywords: datasets
>
> ### ** Examples
>
> data(cypdata)
>
> sizevector <- c(0, 0, 0, 0, 0, 0, 1, 2.5, 4.5, 8, 17.5)
> stagevector <- c("SD", "P1", "P2", "P3", "SL", "D", "XSm",
+ "Sm", "Md", "Lg", "XLg")
> repvector <- c(0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1)
> obsvector <- c(0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1)
> matvector <- c(0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1)
> immvector <- c(0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0)
> propvector <- c(1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0)
> indataset <- c(0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1)
> binvec <- c(0, 0, 0, 0, 0, 0.5, 0.5, 1, 1, 2.5, 7)
>
> cypframe_raw <- sf_create(sizes = sizevector, stagenames = stagevector,
+ repstatus = repvector, obsstatus = obsvector,
+ matstatus = matvector, propstatus = propvector,
+ immstatus = immvector, indataset = indataset,
+ binhalfwidth = binvec)
>
> cypraw_v1 <- verticalize3(data = cypdata, noyears = 6, firstyear = 2004,
+ patchidcol = "patch", individcol = "plantid",
+ blocksize = 4, size1col = "Inf2.04", size2col = "Inf.04",
+ size3col = "Veg.04", repstr1col = "Inf.04",
+ repstr2col = "Inf2.04", fec1col = "Pod.04",
+ stageassign = cypframe_raw, stagesize = "sizeadded",
+ NAas0 = TRUE, NRasRep = TRUE)
>
> rep_cyp_raw <- matrix(0, 11, 11)
> rep_cyp_raw[1:2,7:11] <- 0.5
>
> cypover2r <- overwrite(stage3 = c("SD", "P1", "P2", "P3", "D", "XSm", "Sm", "SL", "SL"),
+ stage2 = c("SD", "SD", "P1", "P2", "P3", "P3", "P3", "P3", "SL"),
+ eststage3 = c(NA, NA, NA, NA, "D", "XSm", "Sm", NA, NA),
+ eststage2 = c(NA, NA, NA, NA, "D", "D", "D", NA, NA),
+ givenrate = c(0.1, 0.2, 0.2, 0.2, NA, NA, NA, 0.25, 0.4),
+ type = c("S", "S", "S", "S", "S", "S", "S", "S", "S"))
>
> cypmatrix2r <- rlefko2(data = cypraw_v1, stageframe = cypframe_raw, year = "all",
+ patch = "all", stages = c("stage3", "stage2", "stage1"),
+ size = c("size3added", "size2added"),
+ repmatrix = rep_cyp_raw, overwrite = cypover2r,
+ yearcol = "year2", patchcol = "patchid",
+ indivcol = "individ")
Warning in `[<-.factor`(`*tmp*`, ri, value = "Dead") :
invalid factor level, NA generated
Error in rlefko2(data = cypraw_v1, stageframe = cypframe_raw, year = "all", :
Some stages in dataset do not match those detailed in the input stageframe.FALSE
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 2.2.2
Check: running examples for arch ‘i386’
Result: ERROR
Running examples in 'lefko3-Ex.R' failed
The error most likely occurred in:
> ### Name: cypdata
> ### Title: Demographic Dataset of _Cypripedium candidum_ Population, in
> ### Horizontal Format
> ### Aliases: cypdata
> ### Keywords: datasets
>
> ### ** Examples
>
> data(cypdata)
>
> sizevector <- c(0, 0, 0, 0, 0, 0, 1, 2.5, 4.5, 8, 17.5)
> stagevector <- c("SD", "P1", "P2", "P3", "SL", "D", "XSm",
+ "Sm", "Md", "Lg", "XLg")
> repvector <- c(0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1)
> obsvector <- c(0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1)
> matvector <- c(0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1)
> immvector <- c(0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0)
> propvector <- c(1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0)
> indataset <- c(0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1)
> binvec <- c(0, 0, 0, 0, 0, 0.5, 0.5, 1, 1, 2.5, 7)
>
> cypframe_raw <- sf_create(sizes = sizevector, stagenames = stagevector,
+ repstatus = repvector, obsstatus = obsvector,
+ matstatus = matvector, propstatus = propvector,
+ immstatus = immvector, indataset = indataset,
+ binhalfwidth = binvec)
>
> cypraw_v1 <- verticalize3(data = cypdata, noyears = 6, firstyear = 2004,
+ patchidcol = "patch", individcol = "plantid",
+ blocksize = 4, size1col = "Inf2.04", size2col = "Inf.04",
+ size3col = "Veg.04", repstr1col = "Inf.04",
+ repstr2col = "Inf2.04", fec1col = "Pod.04",
+ stageassign = cypframe_raw, stagesize = "sizeadded",
+ NAas0 = TRUE, NRasRep = TRUE)
>
> rep_cyp_raw <- matrix(0, 11, 11)
> rep_cyp_raw[1:2,7:11] <- 0.5
>
> cypover2r <- overwrite(stage3 = c("SD", "P1", "P2", "P3", "D", "XSm", "Sm", "SL", "SL"),
+ stage2 = c("SD", "SD", "P1", "P2", "P3", "P3", "P3", "P3", "SL"),
+ eststage3 = c(NA, NA, NA, NA, "D", "XSm", "Sm", NA, NA),
+ eststage2 = c(NA, NA, NA, NA, "D", "D", "D", NA, NA),
+ givenrate = c(0.1, 0.2, 0.2, 0.2, NA, NA, NA, 0.25, 0.4),
+ type = c("S", "S", "S", "S", "S", "S", "S", "S", "S"))
>
> cypmatrix2r <- rlefko2(data = cypraw_v1, stageframe = cypframe_raw, year = "all",
+ patch = "all", stages = c("stage3", "stage2", "stage1"),
+ size = c("size3added", "size2added"),
+ repmatrix = rep_cyp_raw, overwrite = cypover2r,
+ yearcol = "year2", patchcol = "patchid",
+ indivcol = "individ")
Warning in `[<-.factor`(`*tmp*`, ri, value = "Dead") :
invalid factor level, NA generated
Error in rlefko2(data = cypraw_v1, stageframe = cypframe_raw, year = "all", :
Some stages in dataset do not match those detailed in the input stageframe.FALSE
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 2.2.2
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'lefko3-Ex.R' failed
The error most likely occurred in:
> ### Name: cypdata
> ### Title: Demographic Dataset of _Cypripedium candidum_ Population, in
> ### Horizontal Format
> ### Aliases: cypdata
> ### Keywords: datasets
>
> ### ** Examples
>
> data(cypdata)
>
> sizevector <- c(0, 0, 0, 0, 0, 0, 1, 2.5, 4.5, 8, 17.5)
> stagevector <- c("SD", "P1", "P2", "P3", "SL", "D", "XSm",
+ "Sm", "Md", "Lg", "XLg")
> repvector <- c(0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1)
> obsvector <- c(0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1)
> matvector <- c(0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1)
> immvector <- c(0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0)
> propvector <- c(1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0)
> indataset <- c(0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1)
> binvec <- c(0, 0, 0, 0, 0, 0.5, 0.5, 1, 1, 2.5, 7)
>
> cypframe_raw <- sf_create(sizes = sizevector, stagenames = stagevector,
+ repstatus = repvector, obsstatus = obsvector,
+ matstatus = matvector, propstatus = propvector,
+ immstatus = immvector, indataset = indataset,
+ binhalfwidth = binvec)
>
> cypraw_v1 <- verticalize3(data = cypdata, noyears = 6, firstyear = 2004,
+ patchidcol = "patch", individcol = "plantid",
+ blocksize = 4, size1col = "Inf2.04", size2col = "Inf.04",
+ size3col = "Veg.04", repstr1col = "Inf.04",
+ repstr2col = "Inf2.04", fec1col = "Pod.04",
+ stageassign = cypframe_raw, stagesize = "sizeadded",
+ NAas0 = TRUE, NRasRep = TRUE)
>
> rep_cyp_raw <- matrix(0, 11, 11)
> rep_cyp_raw[1:2,7:11] <- 0.5
>
> cypover2r <- overwrite(stage3 = c("SD", "P1", "P2", "P3", "D", "XSm", "Sm", "SL", "SL"),
+ stage2 = c("SD", "SD", "P1", "P2", "P3", "P3", "P3", "P3", "SL"),
+ eststage3 = c(NA, NA, NA, NA, "D", "XSm", "Sm", NA, NA),
+ eststage2 = c(NA, NA, NA, NA, "D", "D", "D", NA, NA),
+ givenrate = c(0.1, 0.2, 0.2, 0.2, NA, NA, NA, 0.25, 0.4),
+ type = c("S", "S", "S", "S", "S", "S", "S", "S", "S"))
>
> cypmatrix2r <- rlefko2(data = cypraw_v1, stageframe = cypframe_raw, year = "all",
+ patch = "all", stages = c("stage3", "stage2", "stage1"),
+ size = c("size3added", "size2added"),
+ repmatrix = rep_cyp_raw, overwrite = cypover2r,
+ yearcol = "year2", patchcol = "patchid",
+ indivcol = "individ")
Warning in `[<-.factor`(`*tmp*`, ri, value = "Dead") :
invalid factor level, NA generated
Error in rlefko2(data = cypraw_v1, stageframe = cypframe_raw, year = "all", :
Some stages in dataset do not match those detailed in the input stageframe.FALSE
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64