CRAN Package Check Results for Maintainer ‘Leena Choi <leena.choi at Vanderbilt.Edu>’

Last updated on 2020-08-07 01:50:25 CEST.

Package NOTE OK
PhysicalActivity 12
ProfileLikelihood 12

Package PhysicalActivity

Current CRAN status: OK: 12

Package ProfileLikelihood

Current CRAN status: NOTE: 12

Version: 1.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'MASS' 'nlme'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    LR.pvalue: warning in matrix(c(y1, y2, (n1 - y1), (n2 - y2)), nr = 2,
     dimnames = list(c("treat", "control"), c("Success", "No success"))):
     partial argument match of 'nr' to 'nrow'
    LR.pvalue: no visible global function definition for 'glm'
    LR.pvalue: no visible binding for global variable 'binomial'
    LR.pvalue: no visible global function definition for 'summary.glm'
    LR.pvalue: no visible global function definition for 'optimize'
    LR.pvalue: no visible global function definition for 'pchisq'
    LR.pvalue: no visible global function definition for 'fisher.test'
    LR.pvalue: no visible global function definition for 'chisq.test'
    profilelike.glm: no visible binding for global variable 'gaussian'
    profilelike.glm: no visible global function definition for
     'model.frame'
    profilelike.glm: no visible global function definition for
     'model.matrix'
    profilelike.glm: no visible global function definition for
     'model.response'
    profilelike.glm: no visible global function definition for 'glm'
    profilelike.glm: no visible binding for global variable 'na.fail'
    profilelike.glm: no visible global function definition for 'logLik'
    profilelike.gls: no visible global function definition for
     'model.frame'
    profilelike.gls: no visible global function definition for
     'model.matrix'
    profilelike.gls: no visible global function definition for
     'model.response'
    profilelike.gls: no visible global function definition for 'lm'
    profilelike.gls: no visible binding for global variable 'na.fail'
    profilelike.gls: no visible global function definition for 'gls'
    profilelike.gls: no visible global function definition for 'logLik'
    profilelike.lm: no visible global function definition for 'model.frame'
    profilelike.lm: no visible global function definition for
     'model.matrix'
    profilelike.lm: no visible global function definition for
     'model.response'
    profilelike.lm: no visible global function definition for 'lm'
    profilelike.lm: no visible binding for global variable 'na.fail'
    profilelike.lm: no visible global function definition for 'logLik'
    profilelike.lme: no visible global function definition for
     'model.frame'
    profilelike.lme: no visible global function definition for
     'model.matrix'
    profilelike.lme: no visible global function definition for
     'model.response'
    profilelike.lme: no visible global function definition for 'lm'
    profilelike.lme: no visible binding for global variable 'na.fail'
    profilelike.lme: no visible global function definition for 'lme'
    profilelike.lme: no visible global function definition for 'logLik'
    profilelike.plot: no visible global function definition for 'lines'
    profilelike.plot: no visible global function definition for 'abline'
    profilelike.plot: no visible global function definition for 'text'
    profilelike.polr: no visible global function definition for
     'model.frame'
    profilelike.polr: no visible global function definition for
     'model.matrix'
    profilelike.polr: no visible global function definition for
     'model.response'
    profilelike.polr: no visible global function definition for 'polr'
    profilelike.polr: no visible binding for global variable 'na.fail'
    profilelike.polr: no visible global function definition for 'logLik'
    Undefined global functions or variables:
     abline binomial chisq.test fisher.test gaussian glm gls lines lm lme
     logLik model.frame model.matrix model.response na.fail optimize
     pchisq polr summary.glm text
    Consider adding
     importFrom("graphics", "abline", "lines", "text")
     importFrom("stats", "binomial", "chisq.test", "fisher.test",
     "gaussian", "glm", "lm", "logLik", "model.frame",
     "model.matrix", "model.response", "na.fail", "optimize",
     "pchisq", "summary.glm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    LR.pvalue: warning in matrix(c(y1, y2, (n1 - y1), (n2 - y2)), nr = 2,
     dimnames = list(c("treat", "control"), c("Success", "No success"))):
     partial argument match of 'nr' to 'nrow'
    LR.pvalue: no visible global function definition for ‘glm’
    LR.pvalue: no visible binding for global variable ‘binomial’
    LR.pvalue: no visible global function definition for ‘summary.glm’
    LR.pvalue: no visible global function definition for ‘optimize’
    LR.pvalue: no visible global function definition for ‘pchisq’
    LR.pvalue: no visible global function definition for ‘fisher.test’
    LR.pvalue: no visible global function definition for ‘chisq.test’
    profilelike.glm: no visible binding for global variable ‘gaussian’
    profilelike.glm: no visible global function definition for
     ‘model.frame’
    profilelike.glm: no visible global function definition for
     ‘model.matrix’
    profilelike.glm: no visible global function definition for
     ‘model.response’
    profilelike.glm: no visible global function definition for ‘glm’
    profilelike.glm: no visible binding for global variable ‘na.fail’
    profilelike.glm: no visible global function definition for ‘logLik’
    profilelike.gls: no visible global function definition for
     ‘model.frame’
    profilelike.gls: no visible global function definition for
     ‘model.matrix’
    profilelike.gls: no visible global function definition for
     ‘model.response’
    profilelike.gls: no visible global function definition for ‘lm’
    profilelike.gls: no visible binding for global variable ‘na.fail’
    profilelike.gls: no visible global function definition for ‘gls’
    profilelike.gls: no visible global function definition for ‘logLik’
    profilelike.lm: no visible global function definition for ‘model.frame’
    profilelike.lm: no visible global function definition for
     ‘model.matrix’
    profilelike.lm: no visible global function definition for
     ‘model.response’
    profilelike.lm: no visible global function definition for ‘lm’
    profilelike.lm: no visible binding for global variable ‘na.fail’
    profilelike.lm: no visible global function definition for ‘logLik’
    profilelike.lme: no visible global function definition for
     ‘model.frame’
    profilelike.lme: no visible global function definition for
     ‘model.matrix’
    profilelike.lme: no visible global function definition for
     ‘model.response’
    profilelike.lme: no visible global function definition for ‘lm’
    profilelike.lme: no visible binding for global variable ‘na.fail’
    profilelike.lme: no visible global function definition for ‘lme’
    profilelike.lme: no visible global function definition for ‘logLik’
    profilelike.plot: no visible global function definition for ‘plot’
    profilelike.plot: no visible global function definition for ‘lines’
    profilelike.plot: no visible global function definition for ‘abline’
    profilelike.plot: no visible global function definition for ‘text’
    profilelike.polr: no visible global function definition for
     ‘model.frame’
    profilelike.polr: no visible global function definition for
     ‘model.matrix’
    profilelike.polr: no visible global function definition for
     ‘model.response’
    profilelike.polr: no visible global function definition for ‘polr’
    profilelike.polr: no visible binding for global variable ‘na.fail’
    profilelike.polr: no visible global function definition for ‘logLik’
    Undefined global functions or variables:
     abline binomial chisq.test fisher.test gaussian glm gls lines lm lme
     logLik model.frame model.matrix model.response na.fail optimize
     pchisq plot polr summary.glm text
    Consider adding
     importFrom("graphics", "abline", "lines", "plot", "text")
     importFrom("stats", "binomial", "chisq.test", "fisher.test",
     "gaussian", "glm", "lm", "logLik", "model.frame",
     "model.matrix", "model.response", "na.fail", "optimize",
     "pchisq", "summary.glm")
    to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64