Last updated on 2020-08-07 01:50:25 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| BioInstaller | 1 | 11 | |
| configr | 12 |
Current CRAN status: ERROR: 1, NOTE: 11
Version: 0.3.7
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'GRCh37_MT_ensGene.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 0.3.7
Check: installed package size
Result: NOTE
installed size is 11.7Mb
sub-directories of 1Mb or more:
doc 2.5Mb
extdata 8.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.3.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [64s/182s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BioInstaller)
>
>
> test_check("BioInstaller")
cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/github_demo0'...
── 1. Error: install.github (@test_install.R#12) ──────────────────────────────
the SSL certificate is invalid
Backtrace:
1. BioInstaller::install.github(...)
2. BioInstaller:::git.download(...)
3. git2r::clone(github_url, destdir)
trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
Content type 'text/plain; charset=utf-8' length 3131 bytes
==================================================
downloaded 3131 bytes
trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
Content type 'text/plain; charset=utf-8' length 3131 bytes
==================================================
downloaded 3131 bytes
trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
Content type 'text/plain; charset=utf-8' length 3131 bytes
==================================================
downloaded 3131 bytes
cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/github_demo3'...
cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/github_demo'...
cloning into '/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/denpendence1'...
/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial not empty, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial not empty, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial not empty, overwrite?[y]
More than 3 counts input, default is not to overwrite.
/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial existed, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial existed, overwrite?[y]
Please input y/n/Y/N!
/tmp/RtmpOoaGgR/working_dir/RtmpW_a4lm/destdir.initial existed, overwrite?[y]
More than 3 counts input, default is not to overwrite.
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 62 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: install.github (@test_install.R#12)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Current CRAN status: OK: 12