Last updated on 2020-08-07 01:50:25 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| genBaRcode | 2 | 1 | 9 |
Current CRAN status: ERROR: 2, NOTE: 1, OK: 9
Version: 1.2.3
Check: package dependencies
Result: NOTE
Imports includes 22 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggtree’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64
Version: 1.2.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
4. base::getNamespace(ns)
5. base::loadNamespace(name)
7. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
9. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
10. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
11. base:::withOneRestart(expr, restarts[[1L]])
12. base:::doWithOneRestart(return(expr), restart)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 21 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
1. Error: processingRawData - extractBarcodes (@test_raw_data_functions.R#44)
2. Error: processingRawData - fixBorderlineBCs and extractWobble (@test_raw_data_functions.R#121)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.2.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
--- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
there is no package called 'GenomeInfoDbData'
--- failed re-building ‘genBaRcode_Vignette.Rmd’
SUMMARY: processing the following file failed:
‘genBaRcode_Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64