Last updated on 2020-08-07 01:49:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 9.01 | 65.05 | 74.06 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 7.00 | 48.86 | 55.86 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 93.50 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 84.45 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.1 | 22.00 | 74.00 | 96.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1 | 7.92 | 65.01 | 72.93 | OK | |
| r-patched-solaris-x86 | 1.1 | 126.70 | OK | |||
| r-release-linux-x86_64 | 1.1 | 7.04 | 63.80 | 70.84 | OK | |
| r-release-macos-x86_64 | 1.1 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.1 | 20.00 | 104.00 | 124.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 14.00 | 90.00 | 104.00 | ERROR |
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 1.36017549 -0.17333453 5.15855337 0.066867350
Age -0.005980971 0.02021803 -0.04560831 0.03364637 0.767364788
Nodes -0.074748098 0.02328017 -0.12037722 -0.02911897 0.001323632
treatmentLev 0.039682347 0.21881379 -0.38919268 0.46855738 0.856091191
treatmentLev.5FU 0.929566117 0.29841669 0.34466941 1.51446283 0.001839488
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 2.498242e+11 2.151180239 13.72371708 2.498242e+11 2.498242e+11
2 185 6.508872e-01 0.009562625 0.02398302 3.383785e-01 3.943073e-01
3 200 1.360175e+00 0.020218030 0.02328017 2.188138e-01 2.984167e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -4.896554e+11 -4.61820215 -20.6358403 -4.896554e+11 -4.896554e+11
2 185 1.360368e+00 -0.02592800 -0.1262494 -5.617858e-01 2.742226e-01
3 200 -1.733345e-01 -0.04560831 -0.1203772 -3.891927e-01 3.446694e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 4.896554e+11 3.81442439 33.16113068 4.896554e+11 4.896554e+11
2 185 3.911846e+00 0.01155749 -0.03223592 7.646579e-01 1.819907e+00
3 200 5.158553e+00 0.03364637 -0.02911897 4.685574e-01 1.514463e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.000000e+00 0.8517998 0.6481473819 1.0000000 0.999999997
2 185 5.121306e-05 0.4524186 0.0009527703 0.7643518 0.007920171
3 200 6.686735e-02 0.7673648 0.0013236322 0.8560912 0.001839488
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11404 (sockconn)
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 0.74952100 1.02354825 3.96167058 0.0008822744
Age -0.005980971 0.01065919 -0.02687299 0.01491105 0.5747231509
Nodes -0.074748098 0.01929707 -0.11257036 -0.03692583 0.0001072633
treatmentLev 0.039682347 0.28384837 -0.51666046 0.59602515 0.8888170533
treatmentLev.5FU 0.929566117 0.45420885 0.03931677 1.81981547 0.0407012087
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.262790e+11 2.78126326 17.31887339 1.262790e+11 1.262790e+11
2 185 5.693577e-01 0.01039631 0.03326328 3.059064e-01 4.823159e-01
3 200 7.495210e-01 0.01065919 0.01929707 2.838484e-01 4.542089e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -2.475068e+11 -5.85316487 -27.6823466 -2.475068e+11 -2.475068e+11
2 185 1.520166e+00 -0.02756201 -0.1444387 -4.981404e-01 1.017257e-01
3 200 1.023548e+00 -0.02687299 -0.1125704 -5.166605e-01 3.931677e-02
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 2.475068e+11 5.04938710 40.20763705 2.475068e+11 2.475068e+11
2 185 3.752048e+00 0.01319151 -0.01404662 7.010125e-01 1.992404e+00
3 200 3.961671e+00 0.01491105 -0.03692583 5.960251e-01 1.819815e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.000000e+00 0.8851067 0.7176448975 1.0000000 0.99999999
2 185 3.657259e-06 0.4894808 0.0172055256 0.7401974 0.02993791
3 200 8.822744e-04 0.5747232 0.0001072633 0.8888171 0.04070121
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11680 (sockconn)
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 0.70520811 1.1104015 3.87481732 0.0004084349
Age -0.005980971 0.01078986 -0.0271291 0.01516716 0.5793639954
Nodes -0.074748098 0.02114311 -0.1161886 -0.03330760 0.0004072501
treatmentLev 0.039682347 0.28199013 -0.5130183 0.59238299 0.8880891939
treatmentLev.5FU 0.929566117 0.34800777 0.2474709 1.61166135 0.0075601465
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 8.740328e+10 4.15477215 25.26623807 8.740328e+10 8.740328e+10
2 185 6.659429e-01 0.01216874 0.02512267 2.302860e-01 3.224279e-01
3 200 7.052081e-01 0.01078986 0.02114311 2.819901e-01 3.480078e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -1.713104e+11 -8.54524229 -43.2591814 -1.713104e+11 -1.713104e+11
2 185 1.330859e+00 -0.03103598 -0.1284831 -3.499245e-01 4.151062e-01
3 200 1.110402e+00 -0.02712910 -0.1161886 -5.130183e-01 2.474709e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.713104e+11 7.74146453 55.78447182 1.713104e+11 1.713104e+11
2 185 3.941355e+00 0.01666548 -0.03000221 5.527966e-01 1.679024e+00
3 200 3.874817e+00 0.01516716 -0.03330760 5.923830e-01 1.611661e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.000000e+00 0.9229412 0.8042379694 1.0000000 0.999999991
2 185 7.543532e-05 0.5548769 0.0016092298 0.6595905 0.001164486
3 200 4.084349e-04 0.5793640 0.0004072501 0.8880892 0.007560147
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11768 (sockconn)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64