Last updated on 2020-08-07 01:49:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 4.45 | 29.45 | 33.90 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 3.41 | 22.70 | 26.11 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.2 | 47.81 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 39.18 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.2.2 | 12.00 | 53.00 | 65.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.2 | 3.18 | 29.14 | 32.32 | OK | |
| r-patched-solaris-x86 | 1.2.2 | 58.70 | OK | |||
| r-release-linux-x86_64 | 1.2.2 | 3.73 | 28.96 | 32.69 | OK | |
| r-release-macos-x86_64 | 1.2.2 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.2.2 | 13.00 | 76.00 | 89.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.2.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.2 | 7.00 | 66.00 | 73.00 | OK |
Version: 1.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> testthat::test_check("iMRMC")
Loading required package: iMRMC
-- 1. Failure: createIMRMCdf and undoIMRMCdf work as expected (@test_createANDun
`saveResult` not equal to `result`.
Component "perReader": Component "readerID": 'current' is not a factor
Component "perReader": Component "modalityA": 'current' is not a factor
Component "perReader": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "modalityA": 'current' is not a factor
Component "Ustat": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "UstatOrMLE": 'current' is not a factor
Component "MLEstat": Component "modalityA": 'current' is not a factor
Component "MLEstat": Component "modalityB": 'current' is not a factor
Component "MLEstat": Component "UstatOrMLE": 'current' is not a factor
NR N0 N1 modalityA modalityB UstatOrMLE AUCA varAUCA AUCB
1 5 40 40 testA NO_MOD Ustat 0.704375 0.006313930 NA
2 5 40 40 testB NO_MOD Ustat 0.758500 0.002372053 NA
3 5 40 40 testA testB Ustat 0.704375 0.006313930 0.7585
varAUCB
1 NA
2 NA
3 0.002372053
NR N0 N1 modalityA modalityB UstatOrMLE AUCAminusAUCB varAUCAminusAUCB
1 5 40 40 testA NO_MOD Ustat NA NA
2 5 40 40 testB NO_MOD Ustat NA NA
3 5 40 40 testA testB Ustat -0.054125 0.004989509
NR N0 N1 modalityA modalityB UstatOrMLE dfBDG pValueBDG botCIBDG
1 5 40 40 testA NO_MOD Ustat 6.805222 4.221892e-02 0.5099428
2 5 40 40 testB NO_MOD Ustat 27.408388 1.334002e-05 0.6585682
3 5 40 40 testA testB Ustat 7.350070 4.685760e-01 -0.2211537
topCIBDG rejectBDG
1 0.8988072 1
2 0.8584318 1
3 0.1129037 0
Elapsed time: 0.37 0.01 2.51
-- 2. Failure: doIMRMC does not change (@test_doIMRMC.R#74) -------------------
`saveResult` not equal to `result`.
Component "perReader": Component "readerID": 'current' is not a factor
Component "perReader": Component "modalityA": 'current' is not a factor
Component "perReader": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "modalityA": 'current' is not a factor
Component "Ustat": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "UstatOrMLE": 'current' is not a factor
Component "MLEstat": Component "modalityA": 'current' is not a factor
Component "MLEstat": Component "modalityB": 'current' is not a factor
Component "MLEstat": Component "UstatOrMLE": 'current' is not a factor
-- 3. Failure: doIMRMC given fileName does not change (@test_doIMRMCfromFile.R#4
`saveResult` not equal to `result`.
Component "perReader": Component "readerID": 'current' is not a factor
Component "perReader": Component "modalityA": 'current' is not a factor
Component "perReader": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "modalityA": 'current' is not a factor
Component "Ustat": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "UstatOrMLE": 'current' is not a factor
Component "MLEstat": Component "modalityA": 'current' is not a factor
Component "MLEstat": Component "modalityB": 'current' is not a factor
Component "MLEstat": Component "UstatOrMLE": 'current' is not a factor
[1] ""
modality A mean shift, neg = 0.07790319
modality A mean shift, pos = 0.9135697
modality B mean shift, neg = -0.1750383
modality B mean shift, pos = 0.8659156
'data.frame': 880 obs. of 4 variables:
$ readerID : Factor w/ 6 levels "-1","reader1",..: 1 1 1 1 1 1 1 1 1 1 ...
$ caseID : Ord.factor w/ 80 levels "negCase1"<"negCase2"<..: 1 2 3 4 5 6 7 8 9 10 ...
$ modalityID: Factor w/ 3 levels "truth","testA",..: 1 1 1 1 1 1 1 1 1 1 ...
$ score : num 0 0 0 0 0 0 0 0 0 0 ...
uStat11.jointD.identity
$mean
A B AminusB
0.91356967 0.86591565 0.04765402
$var
A B AminusB
0.04841548 0.02890617 0.03198493
uStat11.conditionalD.identity
$mean
A B AminusB
0.91356967 0.86591565 0.04765402
$var
A B AminusB
0.04841548 0.02890617 0.03198493
uStat11.jointD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.04765402 -0.04765402 0.09530804
$var
AminusB CminusD AminusB.minus.CminusD
0.03198493 0.03198493 0.12793972
uStat11.conditionalD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.04765402 -0.04765402 0.09530804
$var
AminusB CminusD AminusB.minus.CminusD
0.03198493 0.03198493 0.12793972
uStat11.jointD.identity
$mean
A B AminusB
1.19898868 1.14801549 0.05097319
$var
A B AminusB
0.016959055 0.028111288 -0.001846576
uStat11.conditionalD.identity
$mean
A B AminusB
1.19898868 1.14801549 0.05097319
$var
A B AminusB
-0.004502460 0.006985771 -0.006778559
uStat11.jointD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.0005571069 -0.0005571069 0.0011142137
$var
AminusB CminusD AminusB.minus.CminusD
0.02589141 0.02589141 0.10356564
uStat11.conditionalD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.0005571069 -0.0005571069 0.0011142137
$var
AminusB CminusD AminusB.minus.CminusD
0.01610192 0.01610192 0.06440770
== testthat results ===========================================================
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Failure: createIMRMCdf and undoIMRMCdf work as expected (@test_createANDundoIMRMCdf.R#60)
2. Failure: doIMRMC does not change (@test_doIMRMC.R#74)
3. Failure: doIMRMC given fileName does not change (@test_doIMRMCfromFile.R#45)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> testthat::test_check("iMRMC")
Loading required package: iMRMC
-- 1. Failure: createIMRMCdf and undoIMRMCdf work as expected (@test_createANDun
`saveResult` not equal to `result`.
Component "perReader": Component "readerID": 'current' is not a factor
Component "perReader": Component "modalityA": 'current' is not a factor
Component "perReader": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "modalityA": 'current' is not a factor
Component "Ustat": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "UstatOrMLE": 'current' is not a factor
Component "MLEstat": Component "modalityA": 'current' is not a factor
Component "MLEstat": Component "modalityB": 'current' is not a factor
Component "MLEstat": Component "UstatOrMLE": 'current' is not a factor
NR N0 N1 modalityA modalityB UstatOrMLE AUCA varAUCA AUCB
1 5 40 40 testA NO_MOD Ustat 0.704375 0.006313930 NA
2 5 40 40 testB NO_MOD Ustat 0.758500 0.002372053 NA
3 5 40 40 testA testB Ustat 0.704375 0.006313930 0.7585
varAUCB
1 NA
2 NA
3 0.002372053
NR N0 N1 modalityA modalityB UstatOrMLE AUCAminusAUCB varAUCAminusAUCB
1 5 40 40 testA NO_MOD Ustat NA NA
2 5 40 40 testB NO_MOD Ustat NA NA
3 5 40 40 testA testB Ustat -0.054125 0.004989509
NR N0 N1 modalityA modalityB UstatOrMLE dfBDG pValueBDG botCIBDG
1 5 40 40 testA NO_MOD Ustat 6.805222 4.221892e-02 0.5099428
2 5 40 40 testB NO_MOD Ustat 27.408388 1.334002e-05 0.6585682
3 5 40 40 testA testB Ustat 7.350070 4.685760e-01 -0.2211537
topCIBDG rejectBDG
1 0.8988072 1
2 0.8584318 1
3 0.1129037 0
Elapsed time: 0.38 0 3.26
-- 2. Failure: doIMRMC does not change (@test_doIMRMC.R#74) -------------------
`saveResult` not equal to `result`.
Component "perReader": Component "readerID": 'current' is not a factor
Component "perReader": Component "modalityA": 'current' is not a factor
Component "perReader": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "modalityA": 'current' is not a factor
Component "Ustat": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "UstatOrMLE": 'current' is not a factor
Component "MLEstat": Component "modalityA": 'current' is not a factor
Component "MLEstat": Component "modalityB": 'current' is not a factor
Component "MLEstat": Component "UstatOrMLE": 'current' is not a factor
-- 3. Failure: doIMRMC given fileName does not change (@test_doIMRMCfromFile.R#4
`saveResult` not equal to `result`.
Component "perReader": Component "readerID": 'current' is not a factor
Component "perReader": Component "modalityA": 'current' is not a factor
Component "perReader": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "modalityA": 'current' is not a factor
Component "Ustat": Component "modalityB": 'current' is not a factor
Component "Ustat": Component "UstatOrMLE": 'current' is not a factor
Component "MLEstat": Component "modalityA": 'current' is not a factor
Component "MLEstat": Component "modalityB": 'current' is not a factor
Component "MLEstat": Component "UstatOrMLE": 'current' is not a factor
[1] ""
modality A mean shift, neg = 0.07790319
modality A mean shift, pos = 0.9135697
modality B mean shift, neg = -0.1750383
modality B mean shift, pos = 0.8659156
'data.frame': 880 obs. of 4 variables:
$ readerID : Factor w/ 6 levels "-1","reader1",..: 1 1 1 1 1 1 1 1 1 1 ...
$ caseID : Ord.factor w/ 80 levels "negCase1"<"negCase2"<..: 1 2 3 4 5 6 7 8 9 10 ...
$ modalityID: Factor w/ 3 levels "truth","testA",..: 1 1 1 1 1 1 1 1 1 1 ...
$ score : num 0 0 0 0 0 0 0 0 0 0 ...
uStat11.jointD.identity
$mean
A B AminusB
0.91356967 0.86591565 0.04765402
$var
A B AminusB
0.04841548 0.02890617 0.03198493
uStat11.conditionalD.identity
$mean
A B AminusB
0.91356967 0.86591565 0.04765402
$var
A B AminusB
0.04841548 0.02890617 0.03198493
uStat11.jointD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.04765402 -0.04765402 0.09530804
$var
AminusB CminusD AminusB.minus.CminusD
0.03198493 0.03198493 0.12793972
uStat11.conditionalD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.04765402 -0.04765402 0.09530804
$var
AminusB CminusD AminusB.minus.CminusD
0.03198493 0.03198493 0.12793972
uStat11.jointD.identity
$mean
A B AminusB
1.19898868 1.14801549 0.05097319
$var
A B AminusB
0.016959055 0.028111288 -0.001846576
uStat11.conditionalD.identity
$mean
A B AminusB
1.19898868 1.14801549 0.05097319
$var
A B AminusB
-0.004502460 0.006985771 -0.006778559
uStat11.jointD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.0005571069 -0.0005571069 0.0011142137
$var
AminusB CminusD AminusB.minus.CminusD
0.02589141 0.02589141 0.10356564
uStat11.conditionalD.diff
$mean
AminusB CminusD AminusB.minus.CminusD
0.0005571069 -0.0005571069 0.0011142137
$var
AminusB CminusD AminusB.minus.CminusD
0.01610192 0.01610192 0.06440770
== testthat results ===========================================================
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Failure: createIMRMCdf and undoIMRMCdf work as expected (@test_createANDundoIMRMCdf.R#60)
2. Failure: doIMRMC does not change (@test_doIMRMC.R#74)
3. Failure: doIMRMC given fileName does not change (@test_doIMRMCfromFile.R#45)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64