Last updated on 2020-08-07 01:49:47 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.2 | 64.23 | 115.46 | 179.69 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3.2 | 48.56 | 89.43 | 137.99 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.2 | 223.27 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.2 | 211.50 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.3.2 | 124.00 | 239.00 | 363.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3.2 | 52.31 | 117.59 | 169.90 | ERROR | |
| r-patched-solaris-x86 | 1.3.2 | 278.10 | ERROR | |||
| r-release-linux-x86_64 | 1.3.2 | 55.09 | 116.67 | 171.76 | ERROR | |
| r-release-macos-x86_64 | 1.3.2 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.3.2 | 131.00 | 186.00 | 317.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.3.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.2 | 102.00 | 186.00 | 288.00 | ERROR |
Version: 1.3.2
Check: tests
Result: ERROR
Running 'testthat.R' [30s/33s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
-- 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ------
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
== testthat results ===========================================================
[ OK: 984 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [25s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
── 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ──────
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 986 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: installed package size
Result: NOTE
installed size is 12.4Mb
sub-directories of 1Mb or more:
CWrappers_1.10.2 2.7Mb
CWrappers_1.10.3 2.6Mb
CWrappers_1.12.0 3.0Mb
libs 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [35s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
── 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ──────
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 986 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [34s/41s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
── 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ──────
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 986 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.2
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [29s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
-- 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ------
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
== testthat results ===========================================================
[ OK: 984 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.3.2
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [35s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
-- 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ------
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
== testthat results ===========================================================
[ OK: 984 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [32s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
── 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ──────
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 986 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘hdf5r-Ex.R’ failed
The error most likely occurred in:
> ### Name: H5A-class
> ### Title: Class for representing HDF5 attributes
> ### Aliases: H5A-class H5A
>
> ### ** Examples
>
> fname <- tempfile(fileext = ".h5")
> file <- H5File$new(fname, mode = "a")
> h5attr(file, "attr_numeric") <- rnorm(10)
> a <- file$attr_open("attr_numeric")
> a$get_info()
corder_valid corder cset data_size
1 0 0 0 80
> a$attr_name()
[1] "attr_numeric"
> a$get_space()
Class: H5S
Type: Simple
Dims: 10
Maxdims: 10
> a$get_type()
Class: H5T_FLOAT
Datatype: H5T_IEEE_F64LE
> a$get_storage_size()
[1] 80
> a$read()
Error in H5ToR_Pre(mem_type, nelem) : HDF5-API Errors:
error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Calls: <Anonymous> -> H5ToR_Pre
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [35s/41s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
── 1. Error: Dataset with more than 2^31 rows (@test-64bit_support.R#43) ──────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_equal(...)
5. hdf5r:::`[.H5D`(large_ds, (2^32 - 20):(2^32 + 20))
6. x$read(...)
7. self$read_low_level(...)
── 2. Error: Datatype conversion with 64bit (@test-64bit_support.R#75) ────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(dbl_vec, dtype_uint64, flags = h5const$H5TOR_CONV_NONE)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 3. Error: Convert H5T_FLOAT works (@test-convert.R#33) ─────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(Robj, dtype_double)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 4. Error: Convert H5T_INTEGER works (@test-convert.R#77) ───────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(robj_double, dtype_uint64)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 5. Error: Convert H5T_ENUM works (@test-convert.R#131) ─────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(obj_logical, enum_logical)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 6. Error: Convert H5T_STRING works (@test-convert.R#171) ───────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(string.utf8, dtype_string_unknown)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 7. Error: Convert R_Complex works (@test-convert.R#222) ────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(r_cmplx, dtype_complex)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 8. Error: Convert H5T_COMPOUND works (@test-convert.R#235) ─────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(test_frame, dtype_cpd)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 9. Error: Convert H5T_ARRAY works (@test-convert.R#246) ────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(test_data, dtype_array, nelem = 20)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 10. Error: Convert H5T_VLEN works (@test-convert.R#256) ────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(test_data, dtype_vlen)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 11. Error: Logical with and without NA (@test-convert.R#379) ───────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(logical_noNA, dtype_logical_noNA)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 12. Error: Basic dataset function (@test-h5a.R#42) ─────────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::read_write_roundtrip(attr_int64, 1:20)
2. h5attr$read()
3. hdf5r:::H5ToR_Pre(mem_type, nelem)
── 13. Error: Creating attributes of different types (@test-h5a.R#151) ────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::read_write_roundtrip(attr_int32, 1:20)
2. h5attr$read()
3. hdf5r:::H5ToR_Pre(mem_type, nelem)
── 14. Error: Basic dataset function (@test-h5d.R#49) ─────────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::read_write_roundtrip(ds_int64_chunked, 1:20)
2. ds$read()
3. self$read_low_level(...)
── 15. Error: Creating datasets of different types (@test-h5d.R#136) ──────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::read_write_roundtrip(ds_int32, 1:20)
2. ds$read()
3. self$read_low_level(...)
── 16. Error: H5P_DATASET_CREATE works (@test-h5p.R#80) ───────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_equal(h5p_obj$get_fill_value(dtype_int), 1)
4. h5p_obj$get_fill_value(dtype_int)
5. hdf5r:::H5ToR_Pre(dtype, 1)
── 17. Failure: native datatypes (@test-h5t.R#120) ────────────────────────────
cpd_test_native_c$equal(cpd_native_c) isn't true.
── 18. Failure: native datatypes (@test-h5t.R#121) ────────────────────────────
cpd_test_native_c$describe() not equal to cpd_native_c$describe().
Component "size": Mean relative difference: 0.1428571
── 19. Error: Names and [[ (@test-high_level_UI.R#61) ─────────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_equal(file.h5[["test_dataset2"]]$read(), robj)
4. file.h5[["test_dataset2"]]$read()
5. self$read_low_level(...)
── 20. Error: subset_h5.H5D (@test-high_level_UI.R#269) ───────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_equal(test[ind1, ind2], robj[ind1, ind2])
5. hdf5r:::`[.H5D`(test, ind1, ind2)
6. x$read(...)
7. self$read_low_level(...)
── 21. Error: attributes (@test-high_level_UI.R#343) ──────────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::h5attributes(file.h5)
2. attr_obj$read()
3. hdf5r:::H5ToR_Pre(mem_type, nelem)
── 22. Error: Subsetting dimensions, drop and write (@test-high_level_UI.R#368)
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_equal(ex_arr_ds[2, , ], ex_array[2, , ])
5. hdf5r:::`[.H5D`(ex_arr_ds, 2, , )
6. x$read(...)
7. self$read_low_level(...)
── 23. Error: Create and dereference references; save in a dataset (@test-refere
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. ds_ref_1$dereference(get_value = TRUE)
2. obj_ds$read_low_level(...)
── 24. Error: Attribute-Errors (@test-zzz-Attribute.R#57) ─────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(...)
6. hdf5r::h5attr(file, "test")
7. attr_obj$read()
8. hdf5r:::H5ToR_Pre(mem_type, nelem)
── 25. Error: Attribute-H5Type-File (@test-zzz-Attribute.R#106) ───────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(h5attr(file, aname), is_identical_to(testall[[i]]))
6. hdf5r::h5attr(file, aname)
7. attr_obj$read()
8. hdf5r:::H5ToR_Pre(mem_type, nelem)
── 26. Error: Attribute-Bug-Scalar-Issue09 (@test-zzz-Attribute.R#183) ────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(...)
7. hdf5r::h5attr(file[["floats"]], "scalar")
8. attr_obj$read()
9. hdf5r:::H5ToR_Pre(mem_type, nelem)
── 27. Error: DataSet-Vector-NA (@test-zzz-DataSet-IO-NA.R#40) ────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::readDataSet(dset11)
2. object$read()
3. self$read_low_level(...)
── 28. Error: DataSet-Vector (@test-zzz-DataSet-IO.R#36) ──────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::readDataSet(dset11)
2. object$read()
3. self$read_low_level(...)
── 29. Error: DataSet-Vector-boundaries (@test-zzz-DataSet-IO.R#105) ──────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::readDataSet(dset1)
2. object$read()
3. self$read_low_level(...)
── 30. Error: datatypes-Matrix (@test-zzz-DataSet-IO.R#158) ───────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::readDataSet(dset11)
2. object$read()
3. self$read_low_level(...)
── 31. Error: datatypes-Array (@test-zzz-DataSet-IO.R#223) ────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::readDataSet(dset11)
2. object$read()
3. self$read_low_level(...)
── 32. Error: datatypes-Array-BugWithASCII (@test-zzz-DataSet-IO.R#271) ───────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(file[["test/ascii"]][], is_identical_to(varlength))
7. hdf5r:::`[.H5D`(file[["test/ascii"]], )
8. x$read(...)
9. self$read_low_level(...)
── 33. Error: DataSet-Select-Subset-vector-read (@test-zzz-DataSet-Select-Subset
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. dset1[1:dset1$dims]
2. hdf5r:::`[.H5D`(dset1, 1:dset1$dims)
3. x$read(...)
4. self$read_low_level(...)
── 34. Error: DataSet-Select-Subset-read-string (@test-zzz-DataSet-Select-Subset
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(testvec[1:3], is_identical_to(LETTERS[1:3]))
7. hdf5r:::`[.H5D`(testvec, 1:3)
8. x$read(...)
9. self$read_low_level(...)
── 35. Error: DataSet-Select-Subset-read-string-fixed (@test-zzz-DataSet-Select-
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(testvec[1:3], is_identical_to(LETTERS[1:3]))
7. hdf5r:::`[.H5D`(testvec, 1:3)
8. x$read(...)
9. self$read_low_level(...)
── 36. Error: DataSet-Select-Subset-vector-write (@test-zzz-DataSet-Select-Subse
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. dset1[]
2. hdf5r:::`[.H5D`(dset1, )
3. x$read(...)
4. self$read_low_level(...)
── 37. Error: DataSet-Select-Subset-matrix-read (@test-zzz-DataSet-Select-Subset
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(readDataSet(dset1), is_identical_to(testmat_n))
6. hdf5r::readDataSet(dset1)
7. object$read()
8. self$read_low_level(...)
── 38. Error: DataSet-Select-Subset-matrix-write (@test-zzz-DataSet-Select-Subse
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(dset2[2, 2], is_identical_to(-2L))
7. hdf5r:::`[.H5D`(dset2, 2, 2)
8. x$read(...)
9. self$read_low_level(...)
── 39. Error: DataSet-Select-Subset-array-read (@test-zzz-DataSet-Select-Subset.
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(readDataSet(dset1), is_identical_to(testmat_n))
6. hdf5r::readDataSet(dset1)
7. object$read()
8. self$read_low_level(...)
── 40. Error: DataSet-Select-Subset-array-write (@test-zzz-DataSet-Select-Subset
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(dset2[2, 2, 2], is_identical_to(-2L))
7. hdf5r:::`[.H5D`(dset2, 2, 2, 2)
8. x$read(...)
9. self$read_low_level(...)
── 41. Error: DataSet-extend (@test-zzz-DataSet-extend.R#43) ──────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_equal(readDataSet(dset2), testmat)
4. hdf5r::readDataSet(dset2)
5. object$read()
6. self$read_low_level(...)
── 42. Error: DataSet-extend-matrix-rbind (@test-zzz-DataSet-extend.R#75) ─────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(...)
6. hdf5r::readDataSet(dset1)
7. object$read()
8. self$read_low_level(...)
── 43. Error: DataSet-extend-matrix-cbind (@test-zzz-DataSet-extend.R#110) ────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(...)
6. hdf5r::readDataSet(dset1)
7. object$read()
8. self$read_low_level(...)
── 44. Error: DataSet-extend-vector-c (@test-zzz-DataSet-extend.R#137) ────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(readDataSet(dset1), is_identical_to(testmat_n_extend))
6. hdf5r::readDataSet(dset1)
7. object$read()
8. self$read_low_level(...)
── 45. Error: datatypes-Array-BugWithScalar (@test-zzz-DataSet-scalar.R#9) ────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. dset[]
2. hdf5r:::`[.H5D`(dset, )
3. x$read(...)
4. self$read_low_level(...)
── 46. Error: DataSet-list-dataset-link (@test-zzz-DataSet.R#182) ─────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(file[["hardlink/test2"]][], is_identical_to(1:3))
7. hdf5r:::`[.H5D`(file[["hardlink/test2"]], )
8. x$read(...)
9. self$read_low_level(...)
── 47. Error: DataSet-Bug-F32-Issue10 (@test-zzz-DataSet.R#203) ───────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(...)
7. hdf5r:::`[.H5D`(file[["floats"]], )
8. x$read(...)
9. self$read_low_level(...)
── 48. Error: H5File-Subset-DataSet (@test-zzz-H5File-Subset.R#58) ────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(readDataSet(dset), is_identical_to(1:10))
6. hdf5r::readDataSet(dset)
7. object$read()
8. self$read_low_level(...)
── 49. Error: CommonFG-unlink (@test-zzz-H5Group.R#216) ───────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(file[["testgroup/testset"]][], is_identical_to(5:6))
7. hdf5r:::`[.H5D`(file[["testgroup/testset"]], )
8. x$read(...)
9. self$read_low_level(...)
── 50. Error: datatypes-IO (@test-zzz-io.R#20) ────────────────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::readDataSet(dset)
2. object$read()
3. self$read_low_level(...)
── 51. Error: DataSet-VLEN-Vector (@test-zzz-vlen.R#69) ───────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_that(testlist_n_in[], is_identical_to(testlist_n))
7. hdf5r:::`[.H5D`(testlist_n_in, )
8. x$read(...)
9. self$read_low_level(...)
── 52. Error: DataSet-VLEN-Vector-Attribute (@test-zzz-vlen.R#117) ────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r::h5attr(testgroup, "testlist_n")
2. attr_obj$read()
3. hdf5r:::H5ToR_Pre(mem_type, nelem)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 456 | SKIPPED: 3 | WARNINGS: 0 | FAILED: 52 ]
1. Error: Dataset with more than 2^31 rows (@test-64bit_support.R#43)
2. Error: Datatype conversion with 64bit (@test-64bit_support.R#75)
3. Error: Convert H5T_FLOAT works (@test-convert.R#33)
4. Error: Convert H5T_INTEGER works (@test-convert.R#77)
5. Error: Convert H5T_ENUM works (@test-convert.R#131)
6. Error: Convert H5T_STRING works (@test-convert.R#171)
7. Error: Convert R_Complex works (@test-convert.R#222)
8. Error: Convert H5T_COMPOUND works (@test-convert.R#235)
9. Error: Convert H5T_ARRAY works (@test-convert.R#246)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.3.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘hdf5r.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 159-160 (hdf5r.Rmd)
Error: processing vignette 'hdf5r.Rmd' failed with diagnostics:
HDF5-API Errors:
error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
--- failed re-building ‘hdf5r.Rmd’
SUMMARY: processing the following file failed:
‘hdf5r.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
── 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ──────
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 986 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.3.2
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-release-macos-x86_64
Version: 1.3.2
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
-- 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ------
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
== testthat results ===========================================================
[ OK: 984 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.3.2
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [24s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
-- 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ------
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
== testthat results ===========================================================
[ OK: 984 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.3.2
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
-- 1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87) ------
suppressWarnings(truncateVec(dbl_vec_int64_na, 0, LLONG_MAX)) not equal to res_dbl_uint64_na$output.
'is.NA' value mismatch: 3 in current 0 in target
== testthat results ===========================================================
[ OK: 984 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: Datatype conversion with 64bit (@test-64bit_support.R#87)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64