Last updated on 2020-08-07 01:50:20 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ICDS | 1 | 11 | |
| LncPath | 8 | 4 | |
| MiRSEA | 12 | ||
| PAGI | 12 | ||
| PriorCD | 9 | 3 | |
| psSubpathway | 12 | ||
| SMDIC | 2 | 1 | 9 |
| SubtypeDrug | 3 | 2 | 7 |
Current CRAN status: ERROR: 1, OK: 11
Version: 0.1.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘org.Hs.eg.db’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 8, OK: 4
Version: 1.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'tTestTable.rda'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘graph’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 12
Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: R code for possible problems
Result: NOTE
CalGIF: no visible binding for global variable 'PAGIData'
CalGIF2: no visible binding for global variable 'PAGIData'
PAGI.Main: no visible binding for global variable 'PAGIData'
PAGI.Main: no visible global function definition for 'p.adjust'
PAGI.Main: no visible global function definition for 'pt'
getclass.labels: no visible binding for global variable 'ExampleData'
getdataset: no visible binding for global variable 'ExampleData'
Undefined global functions or variables:
ExampleData PAGIData p.adjust pt
Consider adding
importFrom("stats", "p.adjust", "pt")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: Rd line widths
Result: NOTE
Rd file 'CalGIF.Rd':
\examples lines wider than 100 characters:
###calculate the global influence factor (GIF) by using the random walk with restart (RWR) algorithm###
Rd file 'PAGI.Main.Rd':
\examples lines wider than 100 characters:
#Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
#"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
#Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
#"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
data 1.6Mb
localdata 3.1Mb
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0
Flags: --no-build-vignettes
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
data 1.6Mb
localdata 3.1Mb
Flavor: r-patched-solaris-x86
Version: 1.0
Flags: --no-build-vignettes
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Title field: should not end in a period.
Flavor: r-patched-solaris-x86
Version: 1.0
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
CalGIF: no visible binding for global variable ‘PAGIData’
CalGIF2: no visible binding for global variable ‘PAGIData’
PAGI.Main: no visible binding for global variable ‘PAGIData’
PAGI.Main: no visible global function definition for ‘p.adjust’
PAGI.Main: no visible global function definition for ‘pt’
getclass.labels: no visible binding for global variable ‘ExampleData’
getdataset: no visible binding for global variable ‘ExampleData’
Undefined global functions or variables:
ExampleData PAGIData p.adjust pt
Consider adding
importFrom("stats", "p.adjust", "pt")
to your NAMESPACE file.
Flavor: r-patched-solaris-x86
Current CRAN status: NOTE: 9, OK: 3
Version: 0.1.0
Check: package vignettes
Result: NOTE
Package vignette with placeholder title 'Vignette Title':
'priorcd.Rmd'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64
Version: 0.1.0
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'network.html' 'network_files'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Current CRAN status: OK: 12
Current CRAN status: ERROR: 2, NOTE: 1, OK: 9
Version: 0.1.2
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 2.1Mb
doc 1.0Mb
Flavor: r-patched-solaris-x86
Version: 0.1.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘maftools’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, NOTE: 2, OK: 7
Version: 0.1.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘devtools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘ChemmineR’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64