CRAN Package Check Results for Maintainer ‘Gregory R. Warnes <greg at warnes.net>’

Last updated on 2020-08-07 01:50:20 CEST.

Package ERROR NOTE OK
gdata 1 11
genetics 9 3
gmodels 1 11
gtools 1 11
mcgibbsit 12
namespace 12
SASxport 12
session 12
SII 12

Package gdata

Current CRAN status: NOTE: 1, OK: 11

Version: 2.18.0
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘reshape’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Package genetics

Current CRAN status: NOTE: 9, OK: 3

Version: 1.3.8.1.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'GeneticsDesign'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.3.8.1.2
Check: Rd cross-references
Result: NOTE
    Undeclared packages ‘bootstrap’, ‘GeneticsDesign’ in Rd xrefs
    Package unavailable to check Rd xrefs: ‘GeneticsDesign’
Flavor: r-devel-linux-x86_64-fedora-clang

Package gmodels

Current CRAN status: NOTE: 1, OK: 11

Version: 2.18.1
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘rms’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Package gtools

Current CRAN status: ERROR: 1, NOTE: 11

Version: 3.8.2
Check: R code for possible problems
Result: NOTE
    Found the following possibly unsafe calls:
    File 'gtools/R/unByteCode.R':
     unlockBinding(name, env = env)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.8.2
Check: Rd cross-references
Result: NOTE
    Undeclared packages ‘taxize’, ‘SGP’, ‘car’, ‘gplots’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.8.2
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'smartbind_Dates.R' [0s]
     Running 'smartbind_emptynames.R' [0s]
     Running 'test_binsearch.R' [1s]
     Running 'test_ddirichlet.R' [0s]
     Running 'test_mixedorder.R' [1s]
     Running 'test_setTCPNoDelay.R' [1s]
    Running the tests in 'tests/test_setTCPNoDelay.R' failed.
    Complete output:
     > library('gtools')
     >
     > host <- "www.r-project.org"
     >
     > socket <- make.socket(host, 80)
     > print(socket)
     Socket connection # 752 to on port 80
     >
     > setTCPNoDelay(socket, TRUE)
     >
     > write.socket(socket, "GET /\n\n")
     > write.socket(socket, "A")
     > write.socket(socket, "B\n")
     >
     > while( (str <- read.socket(socket)) > "" )
     + cat(str)
     socket error: Eine vorhandene Verbindung wurde vom Remotehost geschlossen
     Error in read.socket(socket) : Error reading data in Rsockread
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Package mcgibbsit

Current CRAN status: NOTE: 12

Version: 1.1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: 'coda'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    mcgibbsit: no visible global function definition for 'is.mcmc.list'
    mcgibbsit: no visible global function definition for 'start'
    mcgibbsit: no visible global function definition for 'end'
    mcgibbsit: no visible global function definition for 'thin'
    mcgibbsit: no visible global function definition for 'nvar'
    mcgibbsit: no visible global function definition for 'mcmc'
    mcgibbsit: no visible global function definition for 'mcmc.list'
    mcgibbsit: no visible global function definition for 'varnames'
    mcgibbsit: no visible global function definition for 'qnorm'
    mcgibbsit: no visible global function definition for 'niter'
    mcgibbsit: no visible global function definition for 'quantile'
    mcgibbsit : to.table: no visible global function definition for
     'window'
    mcgibbsit: no visible global function definition for 'var'
    read.mcmc: no visible global function definition for 'mcmc.list'
    read.mcmc: no visible global function definition for 'mcmc'
    Undefined global functions or variables:
     end is.mcmc.list mcmc mcmc.list niter nvar qnorm quantile start thin
     var varnames window
    Consider adding
     importFrom("stats", "end", "qnorm", "quantile", "start", "var",
     "window")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'dnzcY3e.1' 'dnzcY3e.2' 'dnzcY3e.3' 'mcmc.1.csv' 'mcmc.10.csv'
     'mcmc.11.csv' 'mcmc.12.csv' 'mcmc.13.csv' 'mcmc.14.csv' 'mcmc.15.csv'
     'mcmc.16.csv' 'mcmc.17.csv' 'mcmc.18.csv' 'mcmc.19.csv' 'mcmc.2.csv'
     'mcmc.20.csv' 'mcmc.3.csv' 'mcmc.4.csv' 'mcmc.5.csv' 'mcmc.6.csv'
     'mcmc.7.csv' 'mcmc.8.csv' 'mcmc.9.csv'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Package namespace

Current CRAN status: NOTE: 12

Version: 0.9.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.1
Check: compiled code
Result: NOTE
    File ‘namespace/libs/namespace.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package SASxport

Current CRAN status: OK: 12

Package session

Current CRAN status: NOTE: 12

Version: 1.0.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.3
Check: R code for possible problems
Result: NOTE
    capture: no visible binding for global variable 'resultText'
    restore.session: no visible binding for global variable
     '.save.session.packages'
    restore.session: no visible binding for global variable
     '.save.session.search'
    save.session: no visible global function definition for 'dev.list'
    save.session: no visible binding for '<<-' assignment to
     '.save.session.search'
    save.session: no visible binding for '<<-' assignment to
     '.save.session.packages'
    Undefined global functions or variables:
     .save.session.packages .save.session.search dev.list resultText
    Consider adding
     importFrom("grDevices", "dev.list")
    to your NAMESPACE file.
    
    Found the following calls to attach():
    File 'session/R/session.R':
     attach(sub("file:", "", i))
    See section 'Good practice' in '?attach'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.3
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'RSession.Rda'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0.3
Check: R code for possible problems
Result: NOTE
    capture: no visible binding for global variable ‘resultText’
    restore.session: no visible binding for global variable
     ‘.save.session.packages’
    restore.session: no visible binding for global variable
     ‘.save.session.search’
    save.session: no visible global function definition for ‘dev.list’
    save.session: no visible binding for '<<-' assignment to
     ‘.save.session.search’
    save.session: no visible binding for '<<-' assignment to
     ‘.save.session.packages’
    Undefined global functions or variables:
     .save.session.packages .save.session.search dev.list resultText
    Consider adding
     importFrom("grDevices", "dev.list")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package SII

Current CRAN status: NOTE: 12

Version: 1.0.3.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     'gdata' 'splines'
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.3.1
Check: R code for possible problems
Result: NOTE
    plot.SII: no visible global function definition for 'lines'
    plot.SII: no visible global function definition for 'abline'
    plot.SII: no visible global function definition for 'legend'
    sii : approx.l: no visible global function definition for 'approx'
    sii.excel: no visible global function definition for 'predict'
    sii.excel : approx.l: no visible global function definition for
     'approx'
    Undefined global functions or variables:
     abline approx legend lines predict
    Consider adding
     importFrom("graphics", "abline", "legend", "lines")
     importFrom("stats", "approx", "predict")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 1.0.3.1
Check: R code for possible problems
Result: NOTE
    plot.SII: no visible global function definition for ‘plot’
    plot.SII: no visible global function definition for ‘lines’
    plot.SII: no visible global function definition for ‘abline’
    plot.SII: no visible global function definition for ‘legend’
    sii : approx.l: no visible global function definition for ‘approx’
    sii.excel: no visible global function definition for ‘predict’
    sii.excel : approx.l: no visible global function definition for
     ‘approx’
    Undefined global functions or variables:
     abline approx legend lines plot predict
    Consider adding
     importFrom("graphics", "abline", "legend", "lines", "plot")
     importFrom("stats", "approx", "predict")
    to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64