Last updated on 2020-08-07 01:50:20 CEST.
| Package | NOTE |
|---|---|
| BEDASSLE | 12 |
Current CRAN status:
Version: 1.5
Check: R code for possible problems
Result: NOTE
BB_Prior_prob_phi: no visible global function definition for 'dexp'
BB_Update_mu: no visible global function definition for 'rnorm'
BB_Update_mu: no visible global function definition for 'runif'
BB_Update_phi: no visible global function definition for 'rnorm'
BB_Update_phi: no visible global function definition for 'runif'
BB_Update_thetas : <anonymous>: no visible global function definition
for 'rnorm'
BB_Update_thetas: no visible global function definition for 'runif'
Initialize.params: no visible global function definition for 'sd'
MCMC: no visible global function definition for 'runif'
MCMC_BB: no visible global function definition for 'runif'
MCMC_BB: no visible global function definition for 'rexp'
Prior_prob_alpha0: no visible global function definition for 'dgamma'
Prior_prob_alpha2: no visible global function definition for 'dunif'
Prior_prob_alphaD: no visible global function definition for 'dexp'
Prior_prob_alphaE: no visible global function definition for 'dexp'
Prior_prob_beta: no visible global function definition for 'dgamma'
Prior_prob_mu: no visible global function definition for 'dnorm'
Update_a0: no visible global function definition for 'rgamma'
Update_a2: no visible global function definition for 'rnorm'
Update_a2: no visible global function definition for 'runif'
Update_aD: no visible global function definition for 'rnorm'
Update_aD: no visible global function definition for 'runif'
Update_aE: no visible global function definition for 'rnorm'
Update_aE: no visible global function definition for 'runif'
Update_beta: no visible global function definition for 'rgamma'
Update_mu: no visible global function definition for 'rnorm'
Update_mu: no visible global function definition for 'runif'
Update_thetas : <anonymous>: no visible global function definition for
'rnorm'
Update_thetas: no visible global function definition for 'runif'
calculate.all.pairwise.Fst: no visible global function definition for
'combn'
plot_acceptance_rate: no visible global function definition for
'adjustcolor'
plot_acceptance_rate: no visible global function definition for
'abline'
plot_acceptance_rate: no visible global function definition for
'median'
plot_acceptance_rate: no visible global function definition for
'polygon'
plot_all_phi_marginals: no visible global function definition for
'devAskNewPage'
plot_all_phi_trace: no visible global function definition for
'devAskNewPage'
plot_joint_marginal: no visible global function definition for
'rainbow'
plot_joint_marginal: no visible global function definition for 'legend'
plot_marginal: no visible global function definition for 'hist'
plot_marginal: no visible global function definition for 'lines'
plot_marginal: no visible global function definition for 'polygon'
plot_marginal: no visible global function definition for 'adjustcolor'
plot_marginal: no visible global function definition for 'segments'
plot_marginal: no visible global function definition for 'median'
plot_phi_marginal: no visible global function definition for 'hist'
plot_phi_marginal: no visible global function definition for 'lines'
plot_phi_marginal: no visible global function definition for 'polygon'
plot_phi_marginal: no visible global function definition for
'adjustcolor'
plot_phi_marginal: no visible global function definition for 'segments'
plot_phi_marginal: no visible global function definition for 'median'
plot_phi_trace: no visible global function definition for 'adjustcolor'
plot_phi_trace: no visible global function definition for 'abline'
plot_phi_trace: no visible global function definition for 'median'
plot_trace: no visible global function definition for 'adjustcolor'
plot_trace: no visible global function definition for 'abline'
plot_trace: no visible global function definition for 'median'
simulate_allele_count_data: no visible global function definition for
'rbinom'
Undefined global functions or variables:
abline adjustcolor combn devAskNewPage dexp dgamma dnorm dunif hist
legend lines median polygon rainbow rbinom rexp rgamma rnorm runif sd
segments
Consider adding
importFrom("grDevices", "adjustcolor", "devAskNewPage", "rainbow")
importFrom("graphics", "abline", "hist", "legend", "lines", "polygon",
"segments")
importFrom("stats", "dexp", "dgamma", "dnorm", "dunif", "median",
"rbinom", "rexp", "rgamma", "rnorm", "runif", "sd")
importFrom("utils", "combn")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 1.5
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'example_Initial.parameters.Robj' 'example_MCMC_output1.Robj'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.5
Check: R code for possible problems
Result: NOTE
BB_Prior_prob_phi: no visible global function definition for ‘dexp’
BB_Update_mu: no visible global function definition for ‘rnorm’
BB_Update_mu: no visible global function definition for ‘runif’
BB_Update_phi: no visible global function definition for ‘rnorm’
BB_Update_phi: no visible global function definition for ‘runif’
BB_Update_thetas : <anonymous>: no visible global function definition
for ‘rnorm’
BB_Update_thetas: no visible global function definition for ‘runif’
Initialize.params: no visible global function definition for ‘sd’
MCMC: no visible global function definition for ‘runif’
MCMC_BB: no visible global function definition for ‘runif’
MCMC_BB: no visible global function definition for ‘rexp’
Prior_prob_alpha0: no visible global function definition for ‘dgamma’
Prior_prob_alpha2: no visible global function definition for ‘dunif’
Prior_prob_alphaD: no visible global function definition for ‘dexp’
Prior_prob_alphaE: no visible global function definition for ‘dexp’
Prior_prob_beta: no visible global function definition for ‘dgamma’
Prior_prob_mu: no visible global function definition for ‘dnorm’
Update_a0: no visible global function definition for ‘rgamma’
Update_a2: no visible global function definition for ‘rnorm’
Update_a2: no visible global function definition for ‘runif’
Update_aD: no visible global function definition for ‘rnorm’
Update_aD: no visible global function definition for ‘runif’
Update_aE: no visible global function definition for ‘rnorm’
Update_aE: no visible global function definition for ‘runif’
Update_beta: no visible global function definition for ‘rgamma’
Update_mu: no visible global function definition for ‘rnorm’
Update_mu: no visible global function definition for ‘runif’
Update_thetas : <anonymous>: no visible global function definition for
‘rnorm’
Update_thetas: no visible global function definition for ‘runif’
calculate.all.pairwise.Fst: no visible global function definition for
‘combn’
plot_acceptance_rate: no visible global function definition for ‘plot’
plot_acceptance_rate: no visible global function definition for
‘adjustcolor’
plot_acceptance_rate: no visible global function definition for
‘abline’
plot_acceptance_rate: no visible global function definition for
‘median’
plot_acceptance_rate: no visible global function definition for
‘polygon’
plot_all_phi_marginals: no visible global function definition for
‘devAskNewPage’
plot_all_phi_trace: no visible global function definition for
‘devAskNewPage’
plot_joint_marginal: no visible global function definition for ‘plot’
plot_joint_marginal: no visible global function definition for
‘rainbow’
plot_joint_marginal: no visible global function definition for ‘legend’
plot_marginal: no visible global function definition for ‘plot’
plot_marginal: no visible global function definition for ‘hist’
plot_marginal: no visible global function definition for ‘lines’
plot_marginal: no visible global function definition for ‘polygon’
plot_marginal: no visible global function definition for ‘adjustcolor’
plot_marginal: no visible global function definition for ‘segments’
plot_marginal: no visible global function definition for ‘median’
plot_phi_marginal: no visible global function definition for ‘plot’
plot_phi_marginal: no visible global function definition for ‘hist’
plot_phi_marginal: no visible global function definition for ‘lines’
plot_phi_marginal: no visible global function definition for ‘polygon’
plot_phi_marginal: no visible global function definition for
‘adjustcolor’
plot_phi_marginal: no visible global function definition for ‘segments’
plot_phi_marginal: no visible global function definition for ‘median’
plot_phi_trace: no visible global function definition for ‘plot’
plot_phi_trace: no visible global function definition for ‘adjustcolor’
plot_phi_trace: no visible global function definition for ‘abline’
plot_phi_trace: no visible global function definition for ‘median’
plot_trace: no visible global function definition for ‘plot’
plot_trace: no visible global function definition for ‘adjustcolor’
plot_trace: no visible global function definition for ‘abline’
plot_trace: no visible global function definition for ‘median’
simulate_allele_count_data: no visible global function definition for
‘rbinom’
Undefined global functions or variables:
abline adjustcolor combn devAskNewPage dexp dgamma dnorm dunif hist
legend lines median plot polygon rainbow rbinom rexp rgamma rnorm
runif sd segments
Consider adding
importFrom("grDevices", "adjustcolor", "devAskNewPage", "rainbow")
importFrom("graphics", "abline", "hist", "legend", "lines", "plot",
"polygon", "segments")
importFrom("stats", "dexp", "dgamma", "dnorm", "dunif", "median",
"rbinom", "rexp", "rgamma", "rnorm", "runif", "sd")
importFrom("utils", "combn")
to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64