CRAN Package Check Results for Package cusum

Last updated on 2020-08-07 01:49:40 CEST.

Check Details

Version: 0.4.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘cusum.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘cusum.Rmd’
    
    Segmentation Fault - core dumped
    --- re-building ‘gscusum.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
     *** caught segfault ***
    address cf79008, cause 'memory not mapped'
    
    Traceback:
     1: gscusum(input_outcomes = input_outcomes, failure_probability = failure_probability, odds_multiplier = 2, limit = cusum_limit, max_num_shuffles = 1000, quantiles = c(0, 0.05, 0.25, 0.5, 0.75, 0.95, 1))
     2: eval(expr, envir, enclos)
     3: eval(expr, envir, enclos)
     4: withVisible(eval(expr, envir, enclos))
     5: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     6: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
     7: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
     8: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
     9: evaluate::evaluate(...)
    10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    11: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    12: block_exec(params)
    13: call_block(x)
    14: process_group.block(group)
    15: process_group(group)
    16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    17: process_file(text, output)
    18: knit(input, text = text, envir = envir, quiet = quiet)
    19: knit2html(..., force_v1 = TRUE)
    20: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
    21: vweave(...)
    22: engine$weave(file, quiet = quiet, encoding = enc)
    23: doTryCatch(return(expr), name, parentenv, handler)
    24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    25: tryCatchList(expr, classes, parentenv, handlers)
    26: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    27: tools:::.buildOneVignette("gscusum.Rmd", "/home/ripley/R/packages/tests32/cusum.Rcheck/vign_test/cusum", TRUE, FALSE, "gscusum", "UTF-8", "/tmp/RtmpRXa44J/working_dir/Rtmp.faWXZ/file678e334455ed.rds")
    An irrecoverable exception occurred. R is aborting now ...
    SUMMARY: processing the following file failed:
     ‘gscusum.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86