Last updated on 2020-08-07 01:49:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 3.17 | 60.77 | 63.94 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 2.68 | 49.87 | 52.55 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 71.88 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 62.21 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.2.0 | 11.00 | 57.00 | 68.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 3.09 | 53.96 | 57.05 | OK | |
| r-patched-solaris-x86 | 0.2.0 | 72.80 | OK | |||
| r-release-linux-x86_64 | 0.2.0 | 2.99 | 54.15 | 57.14 | OK | |
| r-release-macos-x86_64 | 0.2.0 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.2.0 | 14.00 | 71.00 | 85.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.0 | 6.00 | 55.00 | 61.00 | OK |
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘constellation-Ex.R’ failed
The error most likely occurred in:
> ### Name: bundle
> ### Title: Identify bundle items that occur around a given event
> ### Aliases: bundle
>
> ### ** Examples
>
> library(data.table)
> temp <- as.data.table(vitals[VARIABLE == "TEMPERATURE"])
> pulse <- as.data.table(vitals[VARIABLE == "PULSE"])
> resp <- as.data.table(vitals[VARIABLE == "RESPIRATORY_RATE"])
>
> temp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
+ format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
> pulse[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
+ format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
> resp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
+ format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
>
> # Pass single window_hours_pre
> # All instances of bundle items within time window of event
> bundle(temp, pulse, resp,
+ bundle_names = c("PLATELETS", "INR"), window_hours_pre = 24,
+ window_hours_post = c(6, 6), join_key = "PAT_ID",
+ time_var = "RECORDED_TIME", event_name = "CREATININE", mult = "all")
Error in as.POSIXct.numeric(e) : 'origin' must be supplied
Calls: bundle ... unlist -> lapply -> FUN -> as.POSIXct -> as.POSIXct.numeric
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
16. base:::FUN(X[[i]], ...)
18. base::as.POSIXct.numeric(e)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
2. Error: bundle names assign properly (@test-bundle.R#130)
3. Error: event name assigns properly (@test-bundle.R#162)
4. Error: window hours roll over (@test-bundle.R#173)
5. Error: default arguments function properly (@test-bundle.R#209)
6. Error: value change produces expected values for test patient (@test-value_change.R#25)
7. Error: default arguments function properly (@test-value_change.R#54)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘identify_sepsis.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 70-76 (identify_sepsis.Rmd)
Error: processing vignette 'identify_sepsis.Rmd' failed with diagnostics:
'origin' must be supplied
--- failed re-building ‘identify_sepsis.Rmd’
SUMMARY: processing the following file failed:
‘identify_sepsis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64