CRAN Package Check Results for Maintainer ‘Carl Boettiger <cboettig at gmail.com>’

Last updated on 2020-08-07 01:50:15 CEST.

Package FAIL ERROR WARN NOTE OK
arkdb 10 2
codemetar 1 4 7
EcoNetGen 12
EML 12
emld 1 11
knitcitations 12
piggyback 12
pmc 1 11
rdflib 3 9
rfigshare 12
rfishbase 5 7
RNeXML 12
sarsop 7 5
taxadb 12
treebase 12

Package arkdb

Current CRAN status: NOTE: 10, OK: 2

Version: 0.0.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'MonetDBLite'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Package codemetar

Current CRAN status: ERROR: 1, NOTE: 4, OK: 7

Version: 0.1.9
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘memoise’ ‘pkgbuild’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.9
Check: package dependencies
Result: ERROR
    Package required but not available: ‘gert’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-patched-solaris-x86

Package EcoNetGen

Current CRAN status: OK: 12

Package EML

Current CRAN status: OK: 12

Package emld

Current CRAN status: NOTE: 1, OK: 11

Version: 0.5.0
Check: installed package size
Result: NOTE
     installed size is 5.3Mb
     sub-directories of 1Mb or more:
     xsd 4.1Mb
Flavor: r-patched-solaris-x86

Package knitcitations

Current CRAN status: OK: 12

Package piggyback

Current CRAN status: OK: 12

Package pmc

Current CRAN status: FAIL: 1, OK: 11

Version: 1.0.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘pmc_tutorial.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ape
    Loading required package: subplex
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'gridExtra'
    
    The following object is masked from 'package:dplyr':
    
     combine
    
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    
    Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 1.0.3
Check: PDF version of manual
Result: FAIL
Flavor: r-oldrel-macos-x86_64

Package rdflib

Current CRAN status: WARN: 3, OK: 9

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘rdf_intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 41-42 (rdf_intro.Rmd)
    Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘rdf_intro.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘rdf_intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘rdf_intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 41-42 (rdf_intro.Rmd)
    Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘rdf_intro.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘rdf_intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Package rfigshare

Current CRAN status: NOTE: 12

Version: 0.3.7
Check: R code for possible problems
Result: NOTE
    fs_author_ids : <anonymous>: no visible global function definition for
     'select.list'
    fs_download : <anonymous>: no visible global function definition for
     'download.file'
    Undefined global functions or variables:
     download.file select.list
    Consider adding
     importFrom("utils", "download.file", "select.list")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package rfishbase

Current CRAN status: NOTE: 5, OK: 7

Version: 3.0.4
Check: data for non-ASCII characters
Result: NOTE
     Note: found 44 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64

Package RNeXML

Current CRAN status: OK: 12

Package sarsop

Current CRAN status: NOTE: 7, OK: 5

Version: 0.6.5
Check: installed package size
Result: NOTE
     installed size is 54.4Mb
     sub-directories of 1Mb or more:
     bin 53.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package taxadb

Current CRAN status: NOTE: 12

Version: 0.1.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'MonetDBLite', 'duckdb'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘RSQLite’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘duckdb’
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package treebase

Current CRAN status: OK: 12