CRAN Package Check Results for Maintainer ‘Karl Broman <broman at wisc.edu>’

Last updated on 2020-08-07 01:50:15 CEST.

Package WARN NOTE OK
aRxiv 12
broman 12
lineup 12
negenes 12
qtl 7 5
qtl2 2 5 5
qtl2convert 12
qtl2fst 12
qtlbook 12
qtlcharts 12
regress 12
xoi 12

Package aRxiv

Current CRAN status: OK: 12

Package broman

Current CRAN status: OK: 12

Package lineup

Current CRAN status: OK: 12

Package negenes

Current CRAN status: OK: 12

Package qtl

Current CRAN status: NOTE: 7, OK: 5

Version: 1.46-2
Check: installed package size
Result: NOTE
     installed size is 11.6Mb
     sub-directories of 1Mb or more:
     R 1.7Mb
     contrib 3.8Mb
     doc 3.0Mb
     libs 1.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package qtl2

Current CRAN status: WARN: 2, NOTE: 5, OK: 5

Additional issues

clang-UBSAN

Version: 0.22-11
Check: installed package size
Result: NOTE
     installed size is 51.5Mb
     sub-directories of 1Mb or more:
     extdata 3.3Mb
     libs 46.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.22-11
Check: R code for possible problems
Result: NOTE
    plot_genes : plot_genes_internal: no visible global function definition
     for ‘plot’
    plot_onegeno : plot_onegeno_internal: no visible global function
     definition for ‘plot’
    plot_peaks : plot_peaks_internal: no visible global function definition
     for ‘plot’
    plot_pxg : plot_pxg_internal: no visible global function definition for
     ‘plot’
    plot_scan1 : plot_scan1_internal: no visible global function definition
     for ‘plot’
    Undefined global functions or variables:
     plot
    Consider adding
     importFrom("graphics", "plot")
    to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.22-11
Check: Rd cross-references
Result: WARN
    Missing link or links in documentation object 'plot_genes.Rd':
     ‘[base:plot]{base::plot()}’
    
    Missing link or links in documentation object 'plot_pxg.Rd':
     ‘[base:plot]{base::plot()}’
    
    See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package qtl2convert

Current CRAN status: OK: 12

Package qtl2fst

Current CRAN status: OK: 12

Package qtlbook

Current CRAN status: OK: 12

Package qtlcharts

Current CRAN status: OK: 12

Package regress

Current CRAN status: OK: 12

Package xoi

Current CRAN status: OK: 12