CRAN Package Check Results for Maintainer ‘Anne-Laure Boulesteix <boulesteix at ibe.med.uni-muenchen.de>’

Last updated on 2020-08-07 01:50:15 CEST.

Package NOTE OK
globalboosttest 12
ipflasso 12
MAclinical 12
SNPmaxsel 12
WilcoxCV 12

Package globalboosttest

Current CRAN status: NOTE: 12

Version: 1.1-0
Check: R code for possible problems
Result: NOTE
    globalboosttest: no visible global function definition for 'predict'
    globalboosttest: no visible global function definition for 'lm'
    globalboosttest: no visible global function definition for 'glm'
    globalboosttest: no visible binding for global variable 'binomial'
    globalboosttest: no visible global function definition for 'points'
    globalboosttest: no visible global function definition for 'AIC'
    Undefined global functions or variables:
     AIC binomial glm lm points predict
    Consider adding
     importFrom("graphics", "points")
     importFrom("stats", "AIC", "binomial", "glm", "lm", "predict")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-0
Check: Rd files
Result: NOTE
    prepare_Rd: globalboosttest.Rd:56: Dropping empty section \seealso
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-0
Check: Rd line widths
Result: NOTE
    Rd file 'globalboosttest.Rd':
     \usage lines wider than 90 characters:
     globalboosttest(X,Y,Z=NULL,nperm=1000,mstop=1000,mstopAIC=FALSE,pvalueonly=TRUE,plot=FALSE,...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package ipflasso

Current CRAN status: OK: 12

Package MAclinical

Current CRAN status: NOTE: 12

Version: 1.0-5
Check: R code for possible problems
Result: NOTE
    logistic_z: no visible global function definition for 'glm'
    logistic_z: no visible binding for global variable 'binomial'
    logistic_z: no visible global function definition for 'predict'
    plsrf_x: no visible global function definition for 'qnorm'
    plsrf_x: no visible global function definition for 'predict'
    plsrf_x_pv: no visible global function definition for 'qnorm'
    plsrf_x_pv: no visible global function definition for 'predict'
    plsrf_xz: no visible global function definition for 'qnorm'
    plsrf_xz: no visible global function definition for 'predict'
    plsrf_xz_pv: no visible global function definition for 'qnorm'
    plsrf_xz_pv: no visible global function definition for 'predict'
    rf_z: no visible global function definition for 'qnorm'
    rf_z: no visible global function definition for 'predict'
    simuldata_list: no visible global function definition for 'rnorm'
    simuldatacluster_list: no visible global function definition for
     'rnorm'
    svm_x: no visible global function definition for 'predict'
    Undefined global functions or variables:
     binomial glm predict qnorm rnorm
    Consider adding
     importFrom("stats", "binomial", "glm", "predict", "qnorm", "rnorm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package SNPmaxsel

Current CRAN status: NOTE: 12

Version: 1.0-3
Check: DESCRIPTION meta-information
Result: NOTE
    Packages listed in more than one of Depends, Imports, Suggests, Enhances:
     'mvtnorm' 'combinat'
    A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    chisq.test.a: no visible global function definition for 'chisq.test'
    maxsel: no visible global function definition for 'complete.cases'
    maxsel.asymp.test: no visible global function definition for
     'complete.cases'
    Undefined global functions or variables:
     chisq.test complete.cases
    Consider adding
     importFrom("stats", "chisq.test", "complete.cases")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package WilcoxCV

Current CRAN status: NOTE: 12

Version: 1.0-2
Check: R code for possible problems
Result: NOTE
    wilcox.selection.split: no visible global function definition for
     'pnorm'
    wilcox.test2: no visible global function definition for 'wilcox.test'
    Undefined global functions or variables:
     pnorm wilcox.test
    Consider adding
     importFrom("stats", "pnorm", "wilcox.test")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64