Last updated on 2020-08-07 01:49:35 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 31.42 | 210.60 | 242.02 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 25.98 | 154.73 | 180.71 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 302.25 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 300.35 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.0.2 | 104.00 | 316.00 | 420.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 23.17 | 202.60 | 225.77 | OK | |
| r-patched-solaris-x86 | 1.0.2 | 382.60 | ERROR | |||
| r-release-linux-x86_64 | 1.0.2 | 21.63 | 200.69 | 222.32 | OK | |
| r-release-macos-x86_64 | 1.0.2 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.0.2 | 66.00 | 241.00 | 307.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.2 | 52.00 | 186.00 | 238.00 | OK |
Version: 1.0.2
Check: examples
Result: ERROR
Running examples in ‘biospear-Ex.R’ failed
The error most likely occurred in:
> ### Name: BMsel
> ### Title: Biomarker selection in a Cox regression model
> ### Aliases: BMsel summary.resBMsel
> ### Keywords: survival biomarker selection prognostic interactions
>
> ### ** Examples
>
> ########################################
> # Simulated data set
> ########################################
>
> ## Low calculation time
> set.seed(654321)
> sdata <- simdata(
+ n = 500, p = 20, q.main = 3, q.inter = 0,
+ prob.tt = 0.5, alpha.tt = 0,
+ beta.main = -0.8,
+ b.corr = 0.6, b.corr.by = 4,
+ m0 = 5, wei.shape = 1, recr = 4, fu = 2,
+ timefactor = 1)
>
> resBM <- BMsel(
+ data = sdata,
+ method = c("lasso", "lasso-pcvl"),
+ inter = FALSE,
+ folds = 5)
Computing selection with method: lasso
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Error in coxnet(x, is.sparse, ix, jx, y, weights, offset, alpha, nobs, :
NA/NaN/Inf in foreign function call (arg 16)
Calls: BMsel -> lapply -> FUN -> <Anonymous> -> glmnet -> coxnet
Execution halted
Flavor: r-patched-solaris-x86