Last updated on 2020-08-07 01:50:12 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| cornet | 12 | ||
| joinet | 1 | 6 | 5 |
| palasso | 11 | 1 | |
| starnet | 1 | 11 |
Current CRAN status: OK: 12
Current CRAN status: ERROR: 1, NOTE: 6, OK: 5
Version: 0.0.3
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: 'MRCE'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 0.0.3
Check: examples
Result: ERROR
Running examples in ‘joinet-Ex.R’ failed
The error most likely occurred in:
> ### Name: coef.joinet
> ### Title: Extract Coefficients
> ### Aliases: coef.joinet
>
> ### ** Examples
>
> n <- 50; p <- 100; q <- 3
> X <- matrix(rnorm(n*p),nrow=n,ncol=p)
> Y <- replicate(n=q,expr=rnorm(n=n,mean=rowSums(X[,1:5])))
> object <- joinet(Y=Y,X=X)
Error in approx(lambda, seq(lambda), sfrac) :
need at least two non-NA values to interpolate
Calls: joinet ... NextMethod -> predict.glmnet -> lambda.interp -> approx
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(joinet)
>
> testthat::test_check(package="joinet",stop_on_warning=FALSE)
── 1. Error: (unknown) (@test.R#24) ───────────────────────────────────────────
need at least two non-NA values to interpolate
Backtrace:
1. joinet::joinet(...)
2. glmnet::cv.glmnet(...)
3. glmnet:::cv.glmnet.raw(...)
5. glmnet:::buildPredmat.default(...)
9. glmnet::predict.glmnet(...)
10. glmnet:::lambda.interp(lambda, s)
11. stats::approx(lambda, seq(lambda), sfrac)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 3 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
1. Error: (unknown) (@test.R#24)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘article.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
--- finished re-building ‘article.Rmd’
--- re-building ‘joinet.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Quitting from lines 105-106 (joinet.Rmd)
Error: processing vignette 'joinet.Rmd' failed with diagnostics:
need at least two non-NA values to interpolate
--- failed re-building ‘joinet.Rmd’
SUMMARY: processing the following file failed:
‘joinet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Current CRAN status: NOTE: 11, OK: 1
Version: 0.0.7
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: 'CorShrink'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, OK: 11
Version: 0.0.3
Check: examples
Result: ERROR
Running examples in ‘starnet-Ex.R’ failed
The error most likely occurred in:
> ### Name: coef.starnet
> ### Title: Extract Coefficients
> ### Aliases: coef.starnet
>
> ### ** Examples
>
> set.seed(1)
> n <- 50; p <- 100
> y <- rnorm(n=n)
> X <- matrix(rnorm(n*p),nrow=n,ncol=p)
> object <- starnet(y=y,X=X)
Error in approx(lambda, seq(lambda), sfrac) :
need at least two non-NA values to interpolate
Calls: starnet ... NextMethod -> predict.glmnet -> lambda.interp -> approx
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(starnet)
>
> testthat::test_check(package="starnet",stop_on_warning=FALSE)
── 1. Error: (unknown) (@test.R#16) ───────────────────────────────────────────
need at least two non-NA values to interpolate
Backtrace:
1. starnet::starnet(y = list$y, X = list$X, family = family, foldid = foldid)
2. glmnet::cv.glmnet(...)
3. glmnet:::cv.glmnet.raw(...)
5. glmnet:::buildPredmat.default(...)
9. glmnet::predict.glmnet(...)
10. glmnet:::lambda.interp(lambda, s)
11. stats::approx(lambda, seq(lambda), sfrac)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: (unknown) (@test.R#16)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86