Last updated on 2020-08-07 01:49:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 2.20 | 245.50 | 247.70 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.5 | 1.78 | 183.23 | 185.01 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.5 | 292.19 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.5 | 239.93 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.0.5 | 14.00 | 92.00 | 106.00 | OK | |
| r-patched-linux-x86_64 | 1.0.5 | 2.01 | 232.64 | 234.65 | OK | |
| r-patched-solaris-x86 | 1.0.5 | 363.80 | WARN | |||
| r-release-linux-x86_64 | 1.0.5 | 2.06 | 232.13 | 234.19 | OK | |
| r-release-macos-x86_64 | 1.0.5 | WARN | ||||
| r-release-windows-ix86+x86_64 | 1.0.5 | 11.00 | 429.00 | 440.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.5 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.5 | 5.00 | 91.00 | 96.00 | OK |
Version: 1.0.5
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘curl’ ‘httr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘help.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'https://cloud.r-project.org/src/contrib/ps_1.3.3.tar.gz'
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* installing *source* package ‘ps’ ...
** package ‘ps’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -Wall px.c -o px
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c api-common.c -o api-common.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c common.c -o common.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c extra.c -o extra.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c dummy.c -o dummy.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c error-codes.c -o error-codes.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o
installing via 'install.libs.R' to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-ps/00new/ps
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ps)
* installing *source* package ‘prettyunits’ ...
** package ‘prettyunits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
* installing *source* package ‘backports’ ...
** package ‘backports’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c dotsElt.c -o dotsElt.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c dotsLength.c -o dotsLength.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o backports.so dotsElt.o dotsLength.o init.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-backports/00new/backports/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (backports)
* installing *source* package ‘assertthat’ ...
** package ‘assertthat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (assertthat)
* installing *source* package ‘glue’ ...
** package ‘glue’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c glue.c -o glue.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c trim.c -o trim.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o glue.so glue.o init.o trim.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-glue/00new/glue/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glue)
* installing *source* package ‘fansi’ ...
** package ‘fansi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c assumptions.c -o assumptions.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c has.c -o has.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c nchar.c -o nchar.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c read.c -o read.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c rnchar.c -o rnchar.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c state.c -o state.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c strip.c -o strip.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c strsplit.c -o strsplit.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c tabs.c -o tabs.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c tohtml.c -o tohtml.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unhandled.c -o unhandled.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unique.c -o unique.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c utf8.c -o utf8.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c utils.c -o utils.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c wrap.c -o wrap.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-fansi/00new/fansi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fansi)
* installing *source* package ‘rstudioapi’ ...
** package ‘rstudioapi’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rstudioapi)
* installing *source* package ‘crayon’ ...
** package ‘crayon’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crayon)
* installing *source* package ‘digest’ ...
** package ‘digest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c SpookyV2.cpp -o SpookyV2.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c aes.c -o aes.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c crc32.c -o crc32.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c digest.c -o digest.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c digest2int.c -o digest2int.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c md5.c -o md5.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c pmurhash.c -o pmurhash.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c raes.c -o raes.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c sha1.c -o sha1.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c sha2.c -o sha2.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c sha256.c -o sha256.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c spooky_serialize.cpp -o spooky_serialize.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c xxhash.c -o xxhash.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -G -L/usr/local/lib -o digest.so SpookyV2.o aes.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-digest/00new/digest/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (digest)
* installing *source* package ‘evaluate’ ...
** package ‘evaluate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (evaluate)
* installing *source* package ‘magrittr’ ...
** package ‘magrittr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (magrittr)
* installing *source* package ‘praise’ ...
** package ‘praise’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (praise)
* installing *source* package ‘R6’ ...
** package ‘R6’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (R6)
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I./lib/ -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c lib.c -o lib.o
"lib/node.c", line 72: warning: statement not reached
"lib/squash.c", line 235: warning: statement not reached
"lib/squash.c", line 286: warning: statement not reached
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I./lib/ -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c internal.c -o internal.o
"internal/expr-interp.c", line 96: warning: statement not reached
"internal/expr-interp.c", line 103: warning: statement not reached
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I./lib/ -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c export.c -o export.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I./lib/ -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c capture.c -o capture.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I./lib/ -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c version.c -o version.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-rlang/00new/rlang/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rlang)
* installing *source* package ‘withr’ ...
** package ‘withr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (withr)
* installing *source* package ‘pls’ ...
** package ‘pls’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pls)
* installing *source* package ‘processx’ ...
** package ‘processx’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -Wall tools/px.c -o tools/px
/home/ripley/developerstudio12.6/bin/cc -xc99 -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore supervisor/supervisor.c supervisor/utils.c \
-o supervisor/supervisor
supervisor/supervisor.c:
"supervisor/supervisor.c", line 453: warning: statement not reached
supervisor/utils.c:
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c base64.c -o base64.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c client.c -o client.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c errors.c -o errors.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o client.so base64.o client.o errors.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c poll.c -o poll.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c processx-connection.c -o processx-connection.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c processx-vector.c -o processx-vector.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c create-time.c -o create-time.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unix/childlist.c -o unix/childlist.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unix/connection.c -o unix/connection.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unix/processx.c -o unix/processx.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unix/sigchld.c -o unix/sigchld.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unix/utils.c -o unix/utils.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unix/named_pipe.c -o unix/named_pipe.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c cleancall.c -o cleancall.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o
installing via 'install.libs.R' to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-processx/00new/processx
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (processx)
* installing *source* package ‘rprojroot’ ...
** package ‘rprojroot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rprojroot)
* installing *source* package ‘cli’ ...
** package ‘cli’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cli)
* installing *source* package ‘ellipsis’ ...
** package ‘ellipsis’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c dots.c -o dots.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o ellipsis.so dots.o init.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-ellipsis/00new/ellipsis/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ellipsis)
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
* installing *source* package ‘callr’ ...
** package ‘callr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (callr)
* installing *source* package ‘desc’ ...
** package ‘desc’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (desc)
* installing *source* package ‘pkgbuild’ ...
** package ‘pkgbuild’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgbuild)
* installing *source* package ‘pkgload’ ...
** package ‘pkgload’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c unlock.c -o unlock.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -G -L/usr/local/lib -o pkgload.so unlock.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-pkgload/00new/pkgload/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgload)
* installing *source* package ‘testthat’ ...
** package ‘testthat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init.c -o init.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c reassign.c -o reassign.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c test-catch.cpp -o test-catch.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c test-example.cpp -o test-example.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c test-runner.cpp -o test-runner.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -G -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o
installing to /tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/folder1/00LOCK-testthat/00new/testthat/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (testthat)
The downloaded source packages are in
'/tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/downloaded_packages'
* installing *source* package ‘dummyPackage’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dummyPackage)
trying URL 'https://cloud.r-project.org/src/contrib/apercu_0.2.4.tar.gz'
Content type 'application/x-gzip' length 6362 bytes
==================================================
downloaded 6362 bytes
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
The downloaded source packages are in
'/tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/downloaded_packages'
trying URL 'https://cloud.r-project.org/src/contrib/apercu_0.2.4.tar.gz'
Content type 'application/x-gzip' length 6362 bytes
==================================================
downloaded 6362 bytes
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
The downloaded source packages are in
'/tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/downloaded_packages'
trying URL 'https://cloud.r-project.org/src/contrib/apercu_0.2.4.tar.gz'
Content type 'application/x-gzip' length 6362 bytes
==================================================
downloaded 6362 bytes
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
The downloaded source packages are in
'/tmp/Rtmp0VaOfO/working_dir/RtmpJKa4V0/downloaded_packages'
Error: processing vignette 'help.Rmd' failed with diagnostics:
there is no package called ‘markdown’
--- failed re-building ‘help.Rmd’
SUMMARY: processing the following file failed:
‘help.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘help.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/ps_1.3.3.tgz'
Content type 'application/x-gzip' length 218263 bytes (213 KB)
==================================================
downloaded 213 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/processx_3.4.3.tgz'
Content type 'application/x-gzip' length 278450 bytes (271 KB)
==================================================
downloaded 271 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/callr_3.4.3.tgz'
Content type 'application/x-gzip' length 385702 bytes (376 KB)
==================================================
downloaded 376 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/prettyunits_1.1.1.tgz'
Content type 'application/x-gzip' length 34704 bytes (33 KB)
==================================================
downloaded 33 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/backports_1.1.8.tgz'
Content type 'application/x-gzip' length 71654 bytes (69 KB)
==================================================
downloaded 69 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/assertthat_0.2.1.tgz'
Content type 'application/x-gzip' length 52572 bytes (51 KB)
==================================================
downloaded 51 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/glue_1.4.1.tgz'
Content type 'application/x-gzip' length 138294 bytes (135 KB)
==================================================
downloaded 135 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/fansi_0.4.1.tgz'
Content type 'application/x-gzip' length 210700 bytes (205 KB)
==================================================
downloaded 205 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/desc_1.2.0.tgz'
Content type 'application/x-gzip' length 285234 bytes (278 KB)
==================================================
downloaded 278 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/rprojroot_1.3-2.tgz'
Content type 'application/x-gzip' length 79148 bytes (77 KB)
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downloaded 77 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/rstudioapi_0.11.tgz'
Content type 'application/x-gzip' length 257646 bytes (251 KB)
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downloaded 251 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/cli_2.0.2.tgz'
Content type 'application/x-gzip' length 395495 bytes (386 KB)
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downloaded 386 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/crayon_1.3.4.tgz'
Content type 'application/x-gzip' length 748897 bytes (731 KB)
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downloaded 731 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/digest_0.6.25.tgz'
Content type 'application/x-gzip' length 246065 bytes (240 KB)
==================================================
downloaded 240 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/ellipsis_0.3.1.tgz'
Content type 'application/x-gzip' length 33497 bytes (32 KB)
==================================================
downloaded 32 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/evaluate_0.14.tgz'
Content type 'application/x-gzip' length 74355 bytes (72 KB)
==================================================
downloaded 72 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/magrittr_1.5.tgz'
Content type 'application/x-gzip' length 153226 bytes (149 KB)
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downloaded 149 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/pkgload_1.1.0.tgz'
Content type 'application/x-gzip' length 152111 bytes (148 KB)
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downloaded 148 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/praise_1.0.0.tgz'
Content type 'application/x-gzip' length 16137 bytes (15 KB)
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downloaded 15 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/R6_2.4.1.tgz'
Content type 'application/x-gzip' length 57553 bytes (56 KB)
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downloaded 56 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/withr_2.2.0.tgz'
Content type 'application/x-gzip' length 205737 bytes (200 KB)
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downloaded 200 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/pls_2.7-2.tgz'
Content type 'application/x-gzip' length 1228765 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/testthat_2.3.2.tgz'
Content type 'application/x-gzip' length 2377186 bytes (2.3 MB)
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downloaded 2.3 MB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/apercu_0.2.4.tgz'
Content type 'application/x-gzip' length 26070 bytes (25 KB)
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downloaded 25 KB
trying URL 'https://cloud.r-project.org/src/contrib/pkgbuild_1.1.0.tar.gz'
Content type 'application/x-gzip' length 29854 bytes (29 KB)
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downloaded 29 KB
trying URL 'https://cloud.r-project.org/src/contrib/rlang_0.4.7.tar.gz'
Content type 'application/x-gzip' length 847308 bytes (827 KB)
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downloaded 827 KB
* installing *source* package ‘pkgbuild’ ...
** package ‘pkgbuild’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgbuild)
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c capture.c -o capture.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c export.c -o export.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c internal.c -o internal.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c lib.c -o lib.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c version.c -o version.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Temp/tmp/RtmpCQKXyp/folder1/00LOCK-rlang/00new/rlang/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rlang)
The downloaded source packages are in
'/Volumes/Temp/tmp/RtmpCQKXyp/downloaded_packages'
* installing *source* package ‘dummyPackage’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dummyPackage)
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/apercu_0.2.4.tgz'
Content type 'application/x-gzip' length 26070 bytes (25 KB)
==================================================
downloaded 25 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/apercu_0.2.4.tgz'
Content type 'application/x-gzip' length 26070 bytes (25 KB)
==================================================
downloaded 25 KB
trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/apercu_0.2.4.tgz'
Content type 'application/x-gzip' length 26070 bytes (25 KB)
==================================================
downloaded 25 KB
Error: processing vignette 'help.Rmd' failed with diagnostics:
there is no package called ‘markdown’
--- failed re-building ‘help.Rmd’
SUMMARY: processing the following file failed:
‘help.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.5
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘help.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/crayon_1.3.4.tgz'
Content type 'application/x-gzip' length 750230 bytes (732 KB)
==================================================
downloaded 732 KB
trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/digest_0.6.18.tgz'
Content type 'application/x-gzip' length 188369 bytes (183 KB)
==================================================
downloaded 183 KB
trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/magrittr_1.5.tgz'
Content type 'application/x-gzip' length 155017 bytes (151 KB)
==================================================
downloaded 151 KB
trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/praise_1.0.0.tgz'
Content type 'application/x-gzip' length 16397 bytes (16 KB)
==================================================
downloaded 16 KB
trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/R6_2.4.0.tgz'
Content type 'application/x-gzip' length 57214 bytes (55 KB)
==================================================
downloaded 55 KB
trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/withr_2.1.2.tgz'
Content type 'application/x-gzip' length 152917 bytes (149 KB)
==================================================
downloaded 149 KB
trying URL 'https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz'
Content type 'application/x-gzip' length 12742 bytes (12 KB)
==================================================
downloaded 12 KB
trying URL 'https://cloud.r-project.org/src/contrib/cli_1.1.0.tar.gz'
Content type 'application/x-gzip' length 40232 bytes (39 KB)
==================================================
downloaded 39 KB
trying URL 'https://cloud.r-project.org/src/contrib/rlang_0.3.4.tar.gz'
Content type 'application/x-gzip' length 858992 bytes (838 KB)
==================================================
downloaded 838 KB
trying URL 'https://cloud.r-project.org/src/contrib/pls_2.7-1.tar.gz'
Content type 'application/x-gzip' length 4390103 bytes (4.2 MB)
==================================================
downloaded 4.2 MB
trying URL 'https://cloud.r-project.org/src/contrib/testthat_2.0.1.tar.gz'
Content type 'application/x-gzip' length 217071 bytes (211 KB)
==================================================
downloaded 211 KB
trying URL 'https://cloud.r-project.org/src/contrib/apercu_0.2.3.tar.gz'
Content type 'application/x-gzip' length 7010 bytes
==================================================
downloaded 7010 bytes
* installing *source* package ‘assertthat’ ...
** package ‘assertthat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (assertthat)
* installing *source* package ‘rlang’ ...
** package ‘rlang’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c capture.c -o capture.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c export.c -o export.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c internal.c -o internal.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./lib/ -I/usr/local/include -fPIC -Wall -g -O2 -c lib.c -o lib.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T/RtmphXMbzT/folder1/00LOCK-rlang/00new/rlang/libs
generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rlang)
* installing *source* package ‘pls’ ...
** package ‘pls’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pls)
* installing *source* package ‘cli’ ...
** package ‘cli’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cli)
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
* installing *source* package ‘testthat’ ...
** package ‘testthat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fPIC -Wall -g -O2 -c reassign.c -o reassign.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fPIC -Wall -g -O2 -c test-catch.cpp -o test-catch.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fPIC -Wall -g -O2 -c test-example.cpp -o test-example.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fPIC -Wall -g -O2 -c test-runner.cpp -o test-runner.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T/RtmphXMbzT/folder1/00LOCK-testthat/00new/testthat/libs
generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (testthat)
The downloaded source packages are in
'/private/var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T/RtmphXMbzT/downloaded_packages'
* installing *source* package ‘dummyPackage’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dummyPackage)
trying URL 'https://cloud.r-project.org/src/contrib/apercu_0.2.3.tar.gz'
Content type 'application/x-gzip' length 7010 bytes
==================================================
downloaded 7010 bytes
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
The downloaded source packages are in
'/private/var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T/RtmphXMbzT/downloaded_packages'
trying URL 'https://cloud.r-project.org/src/contrib/apercu_0.2.3.tar.gz'
Content type 'application/x-gzip' length 7010 bytes
==================================================
downloaded 7010 bytes
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
The downloaded source packages are in
'/private/var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T/RtmphXMbzT/downloaded_packages'
trying URL 'https://cloud.r-project.org/src/contrib/apercu_0.2.3.tar.gz'
Content type 'application/x-gzip' length 7010 bytes
==================================================
downloaded 7010 bytes
* installing *source* package ‘apercu’ ...
** package ‘apercu’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apercu)
The downloaded source packages are in
'/private/var/folders/xn/m8dzdsgs7sg8q7jgflnqm8w80000gn/T/RtmphXMbzT/downloaded_packages'
Error: processing vignette 'help.Rmd' failed with diagnostics:
there is no package called ‘markdown’
--- failed re-building ‘help.Rmd’
SUMMARY: processing the following file failed:
‘help.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64