Last updated on 2020-08-07 01:49:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 70.87 | 264.64 | 335.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 51.73 | 191.59 | 243.32 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 412.31 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 407.76 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.1.2 | 183.00 | 542.00 | 725.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 55.70 | 253.96 | 309.66 | OK | |
| r-patched-solaris-x86 | 0.1.2 | 451.10 | ERROR | |||
| r-release-linux-x86_64 | 0.1.2 | 54.58 | 251.62 | 306.20 | OK | |
| r-release-macos-x86_64 | 0.1.2 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.1.2 | 182.00 | 395.00 | 577.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.2 | 127.00 | 342.00 | 469.00 | ERROR |
Version: 0.1.2
Check: package dependencies
Result: NOTE
Imports includes 23 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘tinytest.R’ [22s/37s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("amt")
+ }
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_crs.R.................... 0 tests
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests .t found, creating `track_xyt`.
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 3 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 4 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 5 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 6 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 7 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 8 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 9 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 10 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 11 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 12 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 13 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 14 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 15 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 16 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 17 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 18 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 1 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 2 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 4 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 5 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 6 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 7 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 8 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 9 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 10 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 11 tests <1b>[0;32mOK<1b>[0m
Loading required package: sp
Attaching package: 'sp'
The following object is masked from 'package:amt':
bbox
Attaching package: 'raster'
The following object is masked from 'package:amt':
select
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests .t missing, creating `track_xy`.
Running test_extract_covariates.R..... 0 tests .t found, creating `track_xyt`.
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 1 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 2 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 3 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 4 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 5 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 6 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 6 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 7 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 8 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 10 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 11 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 12 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 13 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 14 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 15 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 16 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 17 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 18 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 19 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 20 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 21 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 22 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 23 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 24 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 25 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 26 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 27 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 28 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 29 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 30 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 31 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 32 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 33 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 34 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 35 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 36 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 37 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 38 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 39 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 40 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 41 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 42 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests .t found, creating `track_xyt`.
Running test_fit_ctmm.R............... 0 tests Minimum sampling interval of 24 hours in unknown
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 1 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 3 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 4 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 5 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 6 tests <1b>[0;32mOK<1b>[0m Error in h(simpleError(msg, call)) :
error in evaluating the argument 'obj' in selecting a method for function 'coordinates': coordinate operation creation failed: generic error of unknown origin
Calls: <Anonymous> ... hr_akde.track_xyt -> grepl -> tolower -> summary -> fit_ctmm
In addition: Warning messages:
1: In as.telemetry.data.frame(data.frame(lon = x$x_, lat = x$y_, timestamp = x$t_)) :
No MoveBank identification found. Assuming data corresponds to one indiviudal.
2: In data(fisher) : data set 'fisher' not found
3: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
4: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
5: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
6: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
7: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
8: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘tinytest.R’ [30s/31s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("amt")
+ }
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_crs.R.................... 0 tests
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests .t found, creating `track_xyt`.
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 3 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 4 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 5 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 6 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 7 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 8 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 9 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 10 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 11 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 12 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 13 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 14 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 15 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 16 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 17 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 18 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 1 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 2 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 4 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 5 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 6 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 7 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 8 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 9 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 10 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 11 tests <1b>[0;32mOK<1b>[0m
Loading required package: sp
Attaching package: 'sp'
The following object is masked from 'package:amt':
bbox
Attaching package: 'raster'
The following object is masked from 'package:amt':
select
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests .t missing, creating `track_xy`.
Running test_extract_covariates.R..... 0 tests .t found, creating `track_xyt`.
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 1 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 2 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 3 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 4 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 5 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 6 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 6 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 7 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 8 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 10 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 11 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 12 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 13 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 14 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 15 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 16 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 17 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 18 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 19 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 20 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 21 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 22 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 23 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 24 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 25 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 26 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 27 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 28 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 29 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 30 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 31 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 32 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 33 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 34 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 35 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 36 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 37 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 38 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 39 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 40 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 41 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 42 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests .t found, creating `track_xyt`.
Running test_fit_ctmm.R............... 0 tests Minimum sampling interval of 24 hours in unknown
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 1 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 3 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 4 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 5 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 6 tests <1b>[0;32mOK<1b>[0m Error in h(simpleError(msg, call)) :
error in evaluating the argument 'obj' in selecting a method for function 'coordinates': coordinate operation creation failed: generic error of unknown origin
Calls: <Anonymous> ... hr_akde.track_xyt -> grepl -> tolower -> summary -> fit_ctmm
In addition: Warning messages:
1: In as.telemetry.data.frame(data.frame(lon = x$x_, lat = x$y_, timestamp = x$t_)) :
No MoveBank identification found. Assuming data corresponds to one indiviudal.
2: In data(fisher) : data set 'fisher' not found
3: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
4: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
5: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
6: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
7: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
8: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘amt-Ex.R’ failed
The error most likely occurred in:
> ### Name: coercion
> ### Title: Coerce a track to other formats.
> ### Aliases: coercion as_sp as_sp.steps_xy as_move as_move.track_xyt
> ### as_ltraj as_ltraj.track_xy as_ltraj.track_xyt as_bcpa
> ### as_bcpa.track_xyt as_telemetry as_telemetry.track_xyt as_moveHMM
> ### as_moveHMM.track_xy
>
> ### ** Examples
>
> data(deer)
> as_move(deer)
class : Move
features : 826
extent : 4309723, 4318383, 3442716, 3450713 (xmin, xmax, ymin, ymax)
crs : +init=epsg:3035 +proj=laea +lat_0=52 +lon_0=10 +x_0=4321000 +y_0=3210000 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs
variables : 1
names : burst_
min values : 1
max values : 35
timestamps : 2008-03-30 00:01:47 ... 2009-04-28 00:00:21 Time difference of 394 days (start ... end, duration)
sensors : unknown
indiv. data :
indiv. value:
date created: 2020-08-04 07:26:00
> as_move(deer, id = "foo")
class : Move
features : 826
extent : 4309723, 4318383, 3442716, 3450713 (xmin, xmax, ymin, ymax)
crs : +init=epsg:3035 +proj=laea +lat_0=52 +lon_0=10 +x_0=4321000 +y_0=3210000 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs
variables : 1
names : burst_
min values : 1
max values : 35
timestamps : 2008-03-30 00:01:47 ... 2009-04-28 00:00:21 Time difference of 394 days (start ... end, duration)
sensors : unknown
indiv. data :
indiv. value:
date created: 2020-08-04 07:26:00
> data(deer)
> as_ltraj(deer)
*********** List of class ltraj ***********
Type of the traject: Type II (time recorded)
* Time zone: UTC *
Irregular traject. Variable time lag between two locs
Characteristics of the bursts:
id burst nb.reloc NAs date.begin date.end
1 animal_1 animal_1 826 0 2008-03-30 00:01:47 2009-04-28 00:00:21
infolocs provided. The following variables are available:
[1] "pkey"
> as_ltraj(deer, id = "animal_3")
*********** List of class ltraj ***********
Type of the traject: Type II (time recorded)
* Time zone: UTC *
Irregular traject. Variable time lag between two locs
Characteristics of the bursts:
id burst nb.reloc NAs date.begin date.end
1 animal_3 animal_3 826 0 2008-03-30 00:01:47 2009-04-28 00:00:21
infolocs provided. The following variables are available:
[1] "pkey"
> data(deer)
> d <- as_bcpa(deer)
> data(deer)
> as_telemetry(deer)
Warning in wkt(obj) : CRS object has no comment
Warning in wkt(CRS(tg)) : CRS object has no comment
Error in (function (cond) :
error in evaluating the argument 'obj' in selecting a method for function 'coordinates': is.character(proj) is not TRUE
Calls: as_telemetry ... <Anonymous> -> <Anonymous> -> get_aoi -> project -> stopifnot
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘tinytest.R’ [15s/20s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("amt")
+ }
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_crs.R.................... 0 tests
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests .t found, creating `track_xyt`.
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests Error in (function (cond) :
error in evaluating the argument 'obj' in selecting a method for function 'coordinates': is.character(proj) is not TRUE
Calls: <Anonymous> ... hr_akde.track_xyt -> grepl -> tolower -> summary -> fit_ctmm
In addition: Warning message:
In steps.track_xyt(t2) : burst's are ignored, use steps_by_burst instead.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘p1_getting_started.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
.t missing, creating `track_xy`.
Quitting from lines 165-166 (p1_getting_started.Rmd)
Error: processing vignette 'p1_getting_started.Rmd' failed with diagnostics:
error in evaluating the argument 'obj' in selecting a method for function 'coordinates': is.character(proj) is not TRUE
--- failed re-building ‘p1_getting_started.Rmd’
--- re-building ‘p3_rsf.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
--- finished re-building ‘p3_rsf.Rmd’
--- re-building ‘p4_SSF.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
Loading required package: sp
Attaching package: 'amt'
The following objects are masked from 'package:raster':
bbox, select
The following object is masked from 'package:sp':
bbox
The following object is masked from 'package:stats':
filter
--- finished re-building ‘p4_SSF.Rmd’
--- re-building ‘p5_other_packages.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
Warning in wkt(obj) : CRS object has no comment
Warning in wkt(CRS(tg)) : CRS object has no comment
Quitting from lines 44-46 (p5_other_packages.Rmd)
Error: processing vignette 'p5_other_packages.Rmd' failed with diagnostics:
error in evaluating the argument 'obj' in selecting a method for function 'coordinates': is.character(proj) is not TRUE
--- failed re-building ‘p5_other_packages.Rmd’
SUMMARY: processing the following files failed:
‘p1_getting_started.Rmd’ ‘p5_other_packages.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.2
Check: running tests for arch ‘i386’
Result: ERROR
Running 'tinytest.R' [14s]
Running the tests in 'tests/tinytest.R' failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("amt")
+ }
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_crs.R.................... 0 tests
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests .t found, creating `track_xyt`.
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 3 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 4 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 5 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 6 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 7 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 8 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 9 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 10 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 11 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 12 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 13 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 14 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 15 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 16 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 17 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 18 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 0 tests
Running test_distributions.R.......... 1 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 2 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 3 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 4 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 5 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 6 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 7 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 8 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 9 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 10 tests <1b>[0;32mOK<1b>[0m
Running test_distributions.R.......... 11 tests <1b>[0;32mOK<1b>[0m
Loading required package: sp
Attaching package: 'sp'
The following object is masked from 'package:amt':
bbox
Attaching package: 'raster'
The following object is masked from 'package:amt':
select
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests .t missing, creating `track_xy`.
Running test_extract_covariates.R..... 0 tests .t found, creating `track_xyt`.
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 1 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 2 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 3 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 4 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 5 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 6 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 6 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 7 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 8 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 9 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 10 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 11 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 12 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 13 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 14 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 15 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 16 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 17 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 18 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 19 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 20 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 21 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 22 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 23 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 24 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 25 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 26 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 27 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 28 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 29 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 30 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 31 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 32 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 33 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 34 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 35 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 36 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 37 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 38 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 39 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 40 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 41 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 42 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests .t found, creating `track_xyt`.
Running test_fit_ctmm.R............... 0 tests Minimum sampling interval of 24 hours in unknown
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 1 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 3 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 4 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 5 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 6 tests <1b>[0;32mOK<1b>[0m Error in project(t(bbox(obj))[, 1:2], tg, inv = TRUE, use_aoi = FALSE) :
coordinate operation creation failed: generic error of unknown origin
Calls: <Anonymous> ... hr_akde.track_xyt -> grepl -> tolower -> summary -> fit_ctmm
In addition: Warning messages:
1: In as.telemetry.data.frame(data.frame(lon = x$x_, lat = x$y_, timestamp = x$t_)) :
No MoveBank identification found. Assuming data corresponds to one indiviudal.
2: In data(fisher) : data set 'fisher' not found
3: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
4: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
5: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
6: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
7: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
8: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.1.2
Check: running tests for arch ‘x64’
Result: ERROR
Running 'tinytest.R' [15s]
Running the tests in 'tests/tinytest.R' failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("amt")
+ }
Attaching package: 'amt'
The following object is masked from 'package:stats':
filter
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests .t found, creating `track_xyt`.
Running test_as_track.R............... 0 tests
Running test_crs.R.................... 0 tests
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests .t found, creating `track_xyt`.
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 0 tests
Running test_crs.R.................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_crs.R.................... 3 tests <1b>[0;32mOK<1b>[0m
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Loading required package: sp
Attaching package: 'sp'
The following object is masked from 'package:amt':
bbox
Attaching package: 'raster'
The following object is masked from 'package:amt':
select
Running test_extract_covariates.R..... 0 tests
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Running test_extract_covariates.R..... 0 tests
Running test_extract_covariates.R..... 0 tests .t missing, creating `track_xy`.
Running test_extract_covariates.R..... 0 tests .t found, creating `track_xyt`.
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Running test_extract_covariates.R..... 34 tests <1b>[0;32mOK<1b>[0m
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Running test_extract_covariates.R..... 38 tests <1b>[0;32mOK<1b>[0m
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Running test_extract_covariates.R..... 40 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 41 tests <1b>[0;32mOK<1b>[0m
Running test_extract_covariates.R..... 42 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests .t found, creating `track_xyt`.
Running test_fit_ctmm.R............... 0 tests Minimum sampling interval of 24 hours in unknown
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 0 tests
Running test_fit_ctmm.R............... 1 tests <1b>[0;32mOK<1b>[0m
Running test_fit_ctmm.R............... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 0 tests
Running test_hr.R..................... 1 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 2 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 3 tests <1b>[0;32mOK<1b>[0m
Running test_hr.R..................... 4 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 5 tests <1b>[0;32mOK<1b>[0m ff is invalid
Running test_hr.R..................... 6 tests <1b>[0;32mOK<1b>[0m Error in project(t(bbox(obj))[, 1:2], tg, inv = TRUE, use_aoi = FALSE) :
coordinate operation creation failed: generic error of unknown origin
Calls: <Anonymous> ... hr_akde.track_xyt -> grepl -> tolower -> summary -> fit_ctmm
In addition: Warning messages:
1: In as.telemetry.data.frame(data.frame(lon = x$x_, lat = x$y_, timestamp = x$t_)) :
No MoveBank identification found. Assuming data corresponds to one indiviudal.
2: In data(fisher) : data set 'fisher' not found
3: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
4: In showSRID(uprojargs, format = "PROJ", multiline = "NO") :
Discarded datum Unknown based on GRS80 ellipsoid in CRS definition,
but +towgs84= values preserved
5: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
6: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
7: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") :
Self-intersection at or near point 1783005.5901911343 2406494.2820731727
8: In rgeos::gUnaryUnion(ff) :
Invalid objects found; consider using set_RGEOS_CheckValidity(2L)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64