Last updated on 2020-08-07 01:50:11 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| MetaIntegrator | 1 | 1 | 3 | 7 |
Current CRAN status: ERROR: 1, WARN: 1, NOTE: 3, OK: 7
Version: 2.1.3
Check: package dependencies
Result: NOTE
Imports includes 35 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.1.3
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BiocManager’ ‘DT’ ‘GEOmetadb’ ‘RMySQL’ ‘RSQLite’ ‘gplots’ ‘pheatmap’
‘readr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-oldrel-macos-x86_64
Version: 2.1.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘GEOmetadb’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64
Version: 2.1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-oldrel-macos-x86_64
Version: 2.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘MetaIntegrator.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 29-30 (MetaIntegrator.Rmd)
Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
there is no package called 'BiocStyle'
--- failed re-building ‘MetaIntegrator.Rmd’
--- re-building ‘MetaIntegratorRealExample.Rmd’ using rmarkdown_notangle
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘MetaIntegratorRealExample.Rmd’
SUMMARY: processing the following file failed:
‘MetaIntegrator.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64