Last updated on 2020-08-07 01:50:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 4.42 | 78.41 | 82.83 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 3.07 | 56.87 | 59.94 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 102.22 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 109.71 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.1.3 | 15.00 | 91.00 | 106.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.3 | 4.66 | 74.89 | 79.55 | NOTE | |
| r-patched-solaris-x86 | 0.1.3 | 94.70 | WARN | |||
| r-release-linux-x86_64 | 0.1.3 | 4.12 | 74.64 | 78.76 | NOTE | |
| r-release-macos-x86_64 | 0.1.3 | WARN | ||||
| r-release-windows-ix86+x86_64 | 0.1.3 | 10.00 | 98.00 | 108.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1.3 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.3 | 8.00 | 79.00 | 87.00 | NOTE |
Version: 0.1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'r2cytoscape'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘SourceSet.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Identifing all possible orderings..
Total run time: 2.89 secs
Identifing all possible orderings..
Total run time: 1.54 secs
Quitting from lines 346-347 (SourceSet.Rmd)
Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘SourceSet.Rmd’
SUMMARY: processing the following file failed:
‘SourceSet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'r2cytoscape', 'hgu95av2.db', 'ALL'
Flavor: r-release-macos-x86_64
Version: 0.1.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘ALL’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘SourceSet.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Identifing all possible orderings..
Total run time: 1.54 secs
Identifing all possible orderings..
Total run time: 0.7 secs
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Warning in normalizePath(f2) :
path[1]="webshot10bcd6cd1471f.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot10bcd6cd1471f.png': No such file or directory
Quitting from lines 346-347 (SourceSet.Rmd)
Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘SourceSet.Rmd’
SUMMARY: processing the following file failed:
‘SourceSet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.1.3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'r2cytoscape', 'BiocStyle', 'hgu95av2.db', 'ALL', 'org.Hs.eg.db'
Flavor: r-oldrel-macos-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘SourceSet.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Identifing all possible orderings..
Total run time: 1.46 secs
Identifing all possible orderings..
Total run time: 0.79 secs
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Warning in normalizePath(f2) :
path[1]="webshot1036025ae8906.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot1036025ae8906.png': No such file or directory
Quitting from lines 346-347 (SourceSet.Rmd)
Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘SourceSet.Rmd’
SUMMARY: processing the following file failed:
‘SourceSet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64