Last updated on 2020-08-07 01:50:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.9-2 | 19.37 | 155.58 | 174.95 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.9-2 | 14.72 | 115.66 | 130.38 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.9-2 | 209.63 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.9-2 | 201.73 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.9-2 | 57.00 | 154.00 | 211.00 | NOTE | |
| r-patched-linux-x86_64 | 1.9-2 | 13.66 | 148.95 | 162.61 | NOTE | |
| r-patched-solaris-x86 | 1.9-2 | 287.40 | NOTE | |||
| r-release-linux-x86_64 | 1.9-2 | 15.50 | 149.50 | 165.00 | NOTE | |
| r-release-macos-x86_64 | 1.9-2 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.9-2 | 42.00 | 237.00 | 279.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.9-2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.9-2 | 31.00 | 129.00 | 160.00 | NOTE |
Version: 1.9-2
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: 'parallel'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.9-2
Check: R code for possible problems
Result: NOTE
GenomicControl : WGchisq: no visible global function definition for
'qchisq'
GenomicControl: no visible binding for global variable 'median'
GenomicControl: no visible global function definition for 'pchisq'
LD.snp: no visible global function definition for 'optimize'
LD.snp: no visible global function definition for 'pchisq'
LDplot: no visible global function definition for 'matplot'
LDplot: no visible global function definition for 'axis'
LDplot: no visible global function definition for 'title'
LDtable: no visible global function definition for 'heat.colors'
LDtable: no visible global function definition for 'image'
LDtable: no visible global function definition for 'abline'
LDtable: no visible global function definition for 'axis'
LDtable: no visible global function definition for 'par'
LDtable: no visible global function definition for 'strwidth'
LDtable: no visible global function definition for 'strheight'
LDtable: no visible global function definition for 'text'
LDtable: no visible global function definition for 'title'
Table.mean.se : <anonymous>: no visible global function definition for
'sd'
WGassociation: no visible global function definition for 'as.formula'
WGassociation: no visible global function definition for 'terms'
WGassociation : association.i: no visible global function definition
for 'as.formula'
WGassociation: no visible global function definition for 'mclapply'
assoc : lrt: no visible global function definition for 'pchisq'
assoc : G: no visible global function definition for 'pchisq'
assoc: no visible global function definition for 'glm'
association: no visible global function definition for 'terms'
association.fit: no visible global function definition for 'glm'
association.fit: no visible binding for global variable 'binomial'
association.fit: no visible global function definition for 'AIC'
association.fit: no visible global function definition for
'fisher.test'
association.fit: no visible binding for global variable 'gaussian'
crea.lab: no visible global function definition for 'text'
haplo.inter.fit: no visible global function definition for 'pchisq'
haplo.interaction: no visible global function definition for 'terms'
interactionPval: no visible global function definition for 'as.formula'
interactionPval: no visible global function definition for 'glm'
interactionPval: no visible global function definition for 'anova'
interleave: no visible global function definition for 'mclapply'
intervals.dif: no visible global function definition for 'qnorm'
intervals.dif: no visible global function definition for 'anova'
intervals.haplo.glm: no visible global function definition for 'qnorm'
intervals.or: no visible global function definition for 'qnorm'
intervals.or: no visible global function definition for 'anova'
maxstat.default: no visible global function definition for
'complete.cases'
maxstat.matrix: no visible global function definition for 'pchisq'
maxstat.matrix: no visible global function definition for 'runif'
permTest : llhd2: no visible global function definition for 'dbeta'
permTest: no visible global function definition for 'nlm'
permTest: no visible global function definition for 'qbeta'
plot.SNPinteraction: no visible global function definition for 'par'
plot.SNPinteraction: no visible global function definition for 'layout'
plot.SNPinteraction: no visible global function definition for 'image'
plot.SNPinteraction: no visible global function definition for 'axis'
plot.SNPinteraction: no visible global function definition for 'title'
plot.SNPinteraction: no visible global function definition for
'segments'
plot.SNPinteraction: no visible global function definition for 'abline'
plot.SNPinteraction: no visible global function definition for 'text'
plot.WGassociation: no visible global function definition for 'par'
plot.WGassociation: no visible global function definition for 'layout'
plot.WGassociation: no visible global function definition for 'text'
plot.WGassociation: no visible global function definition for 'legend'
plot.WGassociation: no visible global function definition for 'axis'
plot.WGassociation: no visible global function definition for
'segments'
plot.WGassociation: no visible global function definition for 'runif'
plot.permTest: no visible global function definition for 'density'
plot.permTest: no visible global function definition for 'dbeta'
plot.permTest: no visible global function definition for 'hist'
plot.permTest: no visible global function definition for 'lines'
plot.permTest: no visible global function definition for 'segments'
plot.permTest: no visible global function definition for 'legend'
plot.snp: no visible binding for global variable 'barplot'
plot.snp: no visible global function definition for 'par'
plot.snp: no visible global function definition for 'layout'
plot.snp: no visible global function definition for 'text'
plotMissing: no visible global function definition for 'par'
plotMissing: no visible global function definition for 'image'
plotMissing: no visible global function definition for 'axis'
plotMissing: no visible global function definition for 'title'
plotMissing: no visible global function definition for 'segments'
plotMissing: no visible global function definition for 'abline'
plotMissing: no visible global function definition for 'text'
print.maxstat: no visible global function definition for 'printCoefmat'
qqpval: no visible global function definition for 'abline'
reorder.snp: no visible global function definition for 'relevel'
setupSNP: no visible global function definition for 'mclapply'
snp: no visible global function definition for 'na.omit'
summary.haplo.glm: no visible global function definition for 'pnorm'
summary.setupSNP: no visible global function definition for 'mclapply'
table.corner : glm2: no visible binding for global variable 'gaussian'
table.corner : glm2: no visible global function definition for
'glm.control'
table.corner : glm2: no visible global function definition for
'model.response'
table.corner : glm2: no visible global function definition for
'is.empty.model'
table.corner : glm2: no visible global function definition for
'model.matrix'
table.corner : glm2: no visible global function definition for
'model.weights'
table.corner : glm2: no visible global function definition for
'model.offset'
table.corner : glm2: no visible global function definition for
'model.extract'
table.corner : glm2: no visible global function definition for
'glm.fit'
table.corner : glm2: no visible global function definition for
'.getXlevels'
table.corner: no visible binding for global variable 'binomial'
table.corner: no visible binding for global variable 'gaussian'
table.interaction: no visible global function definition for 'glm'
table.interaction: no visible binding for global variable 'binomial'
table.interaction: no visible global function definition for 'anova'
table.interaction: no visible binding for global variable 'gaussian'
tableHWE: no visible global function definition for 'mclapply'
Undefined global functions or variables:
.getXlevels AIC abline anova as.formula axis barplot binomial
complete.cases dbeta density fisher.test gaussian glm glm.control
glm.fit heat.colors hist image is.empty.model layout legend lines
matplot mclapply median model.extract model.matrix model.offset
model.response model.weights na.omit nlm optimize par pchisq pnorm
printCoefmat qbeta qchisq qnorm relevel runif sd segments strheight
strwidth terms text title
Consider adding
importFrom("grDevices", "heat.colors")
importFrom("graphics", "abline", "axis", "barplot", "hist", "image",
"layout", "legend", "lines", "matplot", "par", "segments",
"strheight", "strwidth", "text", "title")
importFrom("stats", ".getXlevels", "AIC", "anova", "as.formula",
"binomial", "complete.cases", "dbeta", "density",
"fisher.test", "gaussian", "glm", "glm.control", "glm.fit",
"is.empty.model", "median", "model.extract", "model.matrix",
"model.offset", "model.response", "model.weights",
"na.omit", "nlm", "optimize", "pchisq", "pnorm",
"printCoefmat", "qbeta", "qchisq", "qnorm", "relevel",
"runif", "sd", "terms")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 1.9-2
Check: R code for possible problems
Result: NOTE
GenomicControl : WGchisq: no visible global function definition for
‘qchisq’
GenomicControl: no visible binding for global variable ‘median’
GenomicControl: no visible global function definition for ‘pchisq’
LD.snp: no visible global function definition for ‘optimize’
LD.snp: no visible global function definition for ‘pchisq’
LDplot: no visible global function definition for ‘matplot’
LDplot: no visible global function definition for ‘axis’
LDplot: no visible global function definition for ‘title’
LDtable: no visible global function definition for ‘heat.colors’
LDtable: no visible global function definition for ‘image’
LDtable: no visible global function definition for ‘abline’
LDtable: no visible global function definition for ‘axis’
LDtable: no visible global function definition for ‘par’
LDtable: no visible global function definition for ‘strwidth’
LDtable: no visible global function definition for ‘strheight’
LDtable: no visible global function definition for ‘text’
LDtable: no visible global function definition for ‘title’
Table.mean.se : <anonymous>: no visible global function definition for
‘sd’
WGassociation: no visible global function definition for ‘as.formula’
WGassociation: no visible global function definition for ‘terms’
WGassociation : association.i: no visible global function definition
for ‘as.formula’
WGassociation: no visible global function definition for ‘mclapply’
assoc : lrt: no visible global function definition for ‘pchisq’
assoc : G: no visible global function definition for ‘pchisq’
assoc: no visible global function definition for ‘glm’
association: no visible global function definition for ‘terms’
association.fit: no visible global function definition for ‘glm’
association.fit: no visible binding for global variable ‘binomial’
association.fit: no visible global function definition for ‘AIC’
association.fit: no visible global function definition for
‘fisher.test’
association.fit: no visible binding for global variable ‘gaussian’
crea.lab: no visible global function definition for ‘text’
haplo.inter.fit: no visible global function definition for ‘pchisq’
haplo.interaction: no visible global function definition for ‘terms’
interactionPval: no visible global function definition for ‘as.formula’
interactionPval: no visible global function definition for ‘glm’
interactionPval: no visible global function definition for ‘anova’
interleave: no visible global function definition for ‘mclapply’
intervals.dif: no visible global function definition for ‘qnorm’
intervals.dif: no visible global function definition for ‘anova’
intervals.haplo.glm: no visible global function definition for ‘qnorm’
intervals.or: no visible global function definition for ‘qnorm’
intervals.or: no visible global function definition for ‘anova’
maxstat.default: no visible global function definition for
‘complete.cases’
maxstat.matrix: no visible global function definition for ‘pchisq’
maxstat.matrix: no visible global function definition for ‘runif’
permTest : llhd2: no visible global function definition for ‘dbeta’
permTest: no visible global function definition for ‘nlm’
permTest: no visible global function definition for ‘qbeta’
plot.SNPinteraction: no visible global function definition for ‘par’
plot.SNPinteraction: no visible global function definition for ‘layout’
plot.SNPinteraction: no visible global function definition for ‘image’
plot.SNPinteraction: no visible global function definition for ‘axis’
plot.SNPinteraction: no visible global function definition for ‘title’
plot.SNPinteraction: no visible global function definition for
‘segments’
plot.SNPinteraction: no visible global function definition for ‘abline’
plot.SNPinteraction: no visible global function definition for ‘text’
plot.WGassociation: no visible global function definition for ‘par’
plot.WGassociation: no visible global function definition for ‘layout’
plot.WGassociation: no visible global function definition for ‘plot’
plot.WGassociation: no visible global function definition for ‘text’
plot.WGassociation: no visible global function definition for ‘legend’
plot.WGassociation: no visible global function definition for ‘axis’
plot.WGassociation: no visible global function definition for
‘segments’
plot.WGassociation: no visible global function definition for ‘runif’
plot.permTest: no visible global function definition for ‘density’
plot.permTest: no visible global function definition for ‘plot’
plot.permTest: no visible global function definition for ‘dbeta’
plot.permTest: no visible global function definition for ‘hist’
plot.permTest: no visible global function definition for ‘lines’
plot.permTest: no visible global function definition for ‘segments’
plot.permTest: no visible global function definition for ‘legend’
plot.setupSNP: no visible global function definition for ‘plot’
plot.snp: no visible binding for global variable ‘barplot’
plot.snp: no visible global function definition for ‘par’
plot.snp: no visible global function definition for ‘layout’
plot.snp: no visible global function definition for ‘plot’
plot.snp: no visible global function definition for ‘text’
plotMissing: no visible global function definition for ‘par’
plotMissing: no visible global function definition for ‘image’
plotMissing: no visible global function definition for ‘axis’
plotMissing: no visible global function definition for ‘title’
plotMissing: no visible global function definition for ‘segments’
plotMissing: no visible global function definition for ‘abline’
plotMissing: no visible global function definition for ‘text’
print.maxstat: no visible global function definition for ‘printCoefmat’
qqpval: no visible global function definition for ‘plot’
qqpval: no visible global function definition for ‘abline’
reorder.snp: no visible global function definition for ‘relevel’
setupSNP: no visible global function definition for ‘mclapply’
snp: no visible global function definition for ‘na.omit’
summary.haplo.glm: no visible global function definition for ‘pnorm’
summary.setupSNP: no visible global function definition for ‘mclapply’
table.corner : glm2: no visible binding for global variable ‘gaussian’
table.corner : glm2: no visible global function definition for
‘glm.control’
table.corner : glm2: no visible global function definition for
‘model.response’
table.corner : glm2: no visible global function definition for
‘is.empty.model’
table.corner : glm2: no visible global function definition for
‘model.matrix’
table.corner : glm2: no visible global function definition for
‘model.weights’
table.corner : glm2: no visible global function definition for
‘model.offset’
table.corner : glm2: no visible global function definition for
‘model.extract’
table.corner : glm2: no visible global function definition for
‘glm.fit’
table.corner : glm2: no visible global function definition for
‘.getXlevels’
table.corner: no visible binding for global variable ‘binomial’
table.corner: no visible binding for global variable ‘gaussian’
table.interaction: no visible global function definition for ‘glm’
table.interaction: no visible binding for global variable ‘binomial’
table.interaction: no visible global function definition for ‘anova’
table.interaction: no visible binding for global variable ‘gaussian’
tableHWE: no visible global function definition for ‘mclapply’
Undefined global functions or variables:
.getXlevels AIC abline anova as.formula axis barplot binomial
complete.cases dbeta density fisher.test gaussian glm glm.control
glm.fit heat.colors hist image is.empty.model layout legend lines
matplot mclapply median model.extract model.matrix model.offset
model.response model.weights na.omit nlm optimize par pchisq plot
pnorm printCoefmat qbeta qchisq qnorm relevel runif sd segments
strheight strwidth terms text title
Consider adding
importFrom("grDevices", "heat.colors")
importFrom("graphics", "abline", "axis", "barplot", "hist", "image",
"layout", "legend", "lines", "matplot", "par", "plot",
"segments", "strheight", "strwidth", "text", "title")
importFrom("stats", ".getXlevels", "AIC", "anova", "as.formula",
"binomial", "complete.cases", "dbeta", "density",
"fisher.test", "gaussian", "glm", "glm.control", "glm.fit",
"is.empty.model", "median", "model.extract", "model.matrix",
"model.offset", "model.response", "model.weights",
"na.omit", "nlm", "optimize", "pchisq", "pnorm",
"printCoefmat", "qbeta", "qchisq", "qnorm", "relevel",
"runif", "sd", "terms")
to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64