CRAN Package Check Results for Package RMark

Last updated on 2020-08-07 01:49:58 CEST.

Check Details

Version: 2.2.7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘dipper.inp’ ‘mark001.inp’ ‘mark001.out’ ‘mark001.res’ ‘mark001.vcv’
     ‘mark002.inp’ ‘mark002.out’ ‘mark002.res’ ‘mark002.vcv’ ‘mark003.inp’
     ‘mark003.out’ ‘mark003.res’ ‘mark003.vcv’ ‘mark004.inp’ ‘mark004.out’
     ‘mark004.res’ ‘mark004.vcv’ ‘mark005.inp’ ‘mark005.out’ ‘mark005.res’
     ‘mark005.vcv’ ‘mark006.inp’ ‘mark006.out’ ‘mark006.res’ ‘mark006.vcv’
     ‘mark007.inp’ ‘mark007.out’ ‘mark007.res’ ‘mark007.vcv’ ‘mark008.inp’
     ‘mark008.out’ ‘mark008.res’ ‘mark008.vcv’ ‘mark009.inp’ ‘mark009.out’
     ‘mark009.res’ ‘mark009.vcv’ ‘mark010.inp’ ‘mark010.out’ ‘mark010.res’
     ‘mark010.vcv’ ‘mark010V.tmp’ ‘mark010X.tmp’ ‘mark010Y.tmp’
     ‘mark011.inp’ ‘mark011.out’ ‘mark011.res’ ‘mark011.vcv’ ‘mark012.inp’
     ‘mark012.out’ ‘mark012.res’ ‘mark012.vcv’ ‘mark013.inp’ ‘mark013.out’
     ‘mark013.res’ ‘mark013.vcv’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2.7
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: Software mark not found in path.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 2.2.7
Check: examples
Result: ERROR
    Running examples in ‘RMark-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Blackduck
    > ### Title: Black duck known fate data
    > ### Aliases: Blackduck
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    >
    > data(Blackduck)
    > # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
    > # no longer allowed. They can work as in this example but they can be misleading
    > # and fail if the levels are non-numeric. The real parameters will remain
    > # unchanged but the betas will be different.
    > Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
    > run.Blackduck=function()
    + {
    + #
    + # Process data
    + #
    + bduck.processed=process.data(Blackduck,model="Known")
    + #
    + # Create default design data
    + #
    + bduck.ddl=make.design.data(bduck.processed)
    + #
    + # Add occasion specific data min < 0; I have no idea what it is
    + #
    + bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
    + #
    + # Define range of models for S
    + #
    + S.dot=list(formula=~1)
    + S.time=list(formula=~time)
    + S.min=list(formula=~min)
    + S.BirdAge=list(formula=~BirdAge)
    + #
    + # Note that in the following model in the MARK example, the covariates
    + # have been standardized. That means that the beta parameters will be different
    + # for BirdAge, Weight and their interaction but the likelihood and real parameter
    + # estimates are the same.
    + #
    + S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight)
    + S.BirdAge.Weight=list(formula=~BirdAge+Weight)
    + #
    + # Create model list and run assortment of models
    + #
    + model.list=create.model.list("Known")
    + bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl,
    + invisible=FALSE,threads=1)
    +
    + #
    + # Return model table and list of models
    + #
    + return(bduck.results)
    + }
    > bduck.results=run.Blackduck()
    
    S.BirdAge
    
    sh: mark: command not found
    Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
     error in running command
    Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
    
    Output file does not exist. Unable to find or run mark.exe
    
    
    S.BirdAge.Weight
    
    sh: mark: command not found
    Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
     error in running command
    Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
    
    Output file does not exist. Unable to find or run mark.exe
    
    
    S.BirdAgexWeight.min
    
    sh: mark: command not found
    Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
     error in running command
    Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
    
    Output file does not exist. Unable to find or run mark.exe
    
    
    S.dot
    
    sh: mark: command not found
    Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
     error in running command
    Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
    
    Output file does not exist. Unable to find or run mark.exe
    
    
    S.min
    
    sh: mark: command not found
    Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
     error in running command
    Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
    
    Output file does not exist. Unable to find or run mark.exe
    
    
    S.time
    
    sh: mark: command not found
    Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
     error in running command
    Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
    
    Output file does not exist. Unable to find or run mark.exe
    
    
    No mark models found
    
    Error in collect.models() :
    Calls: run.Blackduck -> mark.wrapper -> collect.models
    Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64