Last updated on 2020-08-07 01:49:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6 | 3.43 | 52.82 | 56.25 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.6 | 2.63 | 40.59 | 43.22 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.6 | 74.90 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.6 | 66.03 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.6 | 9.00 | 76.00 | 85.00 | NOTE | |
| r-patched-linux-x86_64 | 1.6 | 3.32 | 52.13 | 55.45 | NOTE | |
| r-patched-solaris-x86 | 1.6 | 92.00 | NOTE | |||
| r-release-linux-x86_64 | 1.6 | 3.41 | 51.45 | 54.86 | NOTE | |
| r-release-macos-x86_64 | 1.6 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.6 | 10.00 | 105.00 | 115.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.6 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.6 | 6.00 | 68.00 | 74.00 | NOTE |
Version: 1.6
Check: R code for possible problems
Result: NOTE
RFLPdist: no visible binding for global variable 'dist'
RFLPdist2: no visible binding for global variable 'dist'
RFLPdist2 : dfun1: no visible global function definition for 'combn'
RFLPdist2 : dfun2: no visible global function definition for 'combn'
RFLPdist2ref: no visible binding for global variable 'dist'
RFLPplot: no visible binding for global variable 'dist'
RFLPplot: no visible global function definition for 'order.dendrogram'
RFLPplot: no visible global function definition for 'as.dendrogram'
RFLPplot: no visible global function definition for 'hclust'
RFLPplot: no visible global function definition for 'par'
RFLPplot: no visible global function definition for 'axis'
RFLPplot: no visible global function definition for 'abline'
RFLPplot: no visible global function definition for 'box'
RFLPplot: no visible global function definition for 'title'
RFLPplot: no visible global function definition for 'colorRampPalette'
RFLPplot: no visible global function definition for 'matlines'
RFLPrefplot: no visible binding for global variable 'dist'
RFLPrefplot: no visible global function definition for 'par'
RFLPrefplot: no visible global function definition for 'dev.new'
RFLPrefplot: no visible global function definition for 'axis'
RFLPrefplot: no visible global function definition for 'abline'
RFLPrefplot: no visible global function definition for 'box'
RFLPrefplot: no visible global function definition for 'title'
RFLPrefplot: no visible global function definition for
'colorRampPalette'
RFLPrefplot: no visible global function definition for 'matlines'
diffDist: no visible global function definition for 'dist'
read.blast: no visible global function definition for 'read.table'
read.rflp: no visible global function definition for 'read.delim'
read.rflp : <anonymous>: no visible global function definition for
'tail'
sim2dist: no visible global function definition for 'as.dist'
simulateRFLPdata: no visible global function definition for 'runif'
write.hclust: no visible global function definition for 'cutree'
write.hclust: no visible global function definition for 'write.table'
Undefined global functions or variables:
abline as.dendrogram as.dist axis box colorRampPalette combn cutree
dev.new dist hclust matlines order.dendrogram par read.delim
read.table runif tail title write.table
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.new")
importFrom("graphics", "abline", "axis", "box", "matlines", "par",
"title")
importFrom("stats", "as.dendrogram", "as.dist", "cutree", "dist",
"hclust", "order.dendrogram", "runif")
importFrom("utils", "combn", "read.delim", "read.table", "tail",
"write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 1.6
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'Test.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘MKmisc’
Flavor: r-oldrel-macos-x86_64
Version: 1.6
Check: R code for possible problems
Result: NOTE
RFLPdist: no visible binding for global variable ‘dist’
RFLPdist2: no visible binding for global variable ‘dist’
RFLPdist2 : dfun1: no visible global function definition for ‘combn’
RFLPdist2 : dfun2: no visible global function definition for ‘combn’
RFLPdist2ref: no visible binding for global variable ‘dist’
RFLPplot: no visible binding for global variable ‘dist’
RFLPplot: no visible global function definition for ‘order.dendrogram’
RFLPplot: no visible global function definition for ‘as.dendrogram’
RFLPplot: no visible global function definition for ‘hclust’
RFLPplot: no visible global function definition for ‘par’
RFLPplot: no visible global function definition for ‘plot’
RFLPplot: no visible global function definition for ‘axis’
RFLPplot: no visible global function definition for ‘abline’
RFLPplot: no visible global function definition for ‘box’
RFLPplot: no visible global function definition for ‘title’
RFLPplot: no visible global function definition for ‘colorRampPalette’
RFLPplot: no visible global function definition for ‘matlines’
RFLPrefplot: no visible binding for global variable ‘dist’
RFLPrefplot: no visible global function definition for ‘par’
RFLPrefplot: no visible global function definition for ‘dev.new’
RFLPrefplot: no visible global function definition for ‘plot’
RFLPrefplot: no visible global function definition for ‘axis’
RFLPrefplot: no visible global function definition for ‘abline’
RFLPrefplot: no visible global function definition for ‘box’
RFLPrefplot: no visible global function definition for ‘title’
RFLPrefplot: no visible global function definition for
‘colorRampPalette’
RFLPrefplot: no visible global function definition for ‘matlines’
diffDist: no visible global function definition for ‘dist’
read.blast: no visible global function definition for ‘read.table’
read.rflp: no visible global function definition for ‘read.delim’
read.rflp : <anonymous>: no visible global function definition for
‘tail’
sim2dist: no visible global function definition for ‘as.dist’
simulateRFLPdata: no visible global function definition for ‘runif’
write.hclust: no visible global function definition for ‘cutree’
write.hclust: no visible global function definition for ‘write.table’
Undefined global functions or variables:
abline as.dendrogram as.dist axis box colorRampPalette combn cutree
dev.new dist hclust matlines order.dendrogram par plot read.delim
read.table runif tail title write.table
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.new")
importFrom("graphics", "abline", "axis", "box", "matlines", "par",
"plot", "title")
importFrom("stats", "as.dendrogram", "as.dist", "cutree", "dist",
"hclust", "order.dendrogram", "runif")
importFrom("utils", "combn", "read.delim", "read.table", "tail",
"write.table")
to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.6
Check: examples
Result: ERROR
Running examples in ‘RFLPtools-Ex.R’ failed
The error most likely occurred in:
> ### Name: RFLPtools-package
> ### Title: Tools to analyse RFLP-data
> ### Aliases: RFLPtools-package RFLPtools
> ### Keywords: package multivariate cluster
>
> ### ** Examples
>
> data(RFLPdata)
> res <- RFLPdist(RFLPdata)
> plot(hclust(res[[1]]), main = "Euclidean distance")
>
> par(mfrow = c(1,2))
> plot(hclust(RFLPdist(RFLPdata, nrBands = 3)), cex = 0.7)
> RFLPplot(RFLPdata, nrBands = 3, mar.bottom = 6, cex.axis = 0.8)
>
> data(RFLPref)
> RFLPrefplot(RFLPdata, RFLPref, nrBands = 6, cex.axis = 0.8)
>
>
> library(MKmisc)
Error in library(MKmisc) : there is no package called ‘MKmisc’
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.6
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘RFLPtools.Rnw’
...
- attr(*, "Diag")= logi FALSE
- attr(*, "Upper")= logi FALSE
- attr(*, "method")= chr "maximum"
- attr(*, "call")= language dist(x = x, method = "maximum")
> library(MKmisc)
When sourcing ‘RFLPtools.R’:
Error: there is no package called ‘MKmisc’
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.6
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
...
--- re-building ‘RFLPtools.Rnw’ using Sweave
Loading required package: RColorBrewer
Error: processing vignette 'RFLPtools.Rnw' failed with diagnostics:
chunk 5 (label = cor)
Error in library(MKmisc) : there is no package called ‘MKmisc’
--- failed re-building ‘RFLPtools.Rnw’
SUMMARY: processing the following file failed:
‘RFLPtools.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64