Last updated on 2020-08-07 01:49:55 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1 | 6.78 | 73.81 | 80.59 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1 | 6.89 | 56.98 | 63.87 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1 | 105.51 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1 | 96.13 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.1 | 17.00 | 90.00 | 107.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1 | 7.10 | 74.31 | 81.41 | NOTE | |
| r-patched-solaris-x86 | 0.1 | 133.80 | NOTE | |||
| r-release-linux-x86_64 | 0.1 | 8.59 | 73.38 | 81.97 | NOTE | |
| r-release-macos-x86_64 | 0.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.1 | 15.00 | 112.00 | 127.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1 | 10.00 | 76.00 | 86.00 | NOTE |
Version: 0.1
Check: R code for possible problems
Result: NOTE
Mag.Bmat.plot: no visible global function definition for 'lines'
Mag.Bmat.plot: no visible global function definition for 'text'
Mag.Bmat.plot: no visible global function definition for 'legend'
PCA.biplot: no visible binding for global variable 'sd'
PCA.biplot_no.SN: no visible binding for global variable 'sd'
PLS.GLM.biplot: no visible binding for global variable 'sd'
PLS.GLM.biplot: no visible global function definition for 'sd'
PLS.GLM.biplot_SIMPLS: no visible binding for global variable 'sd'
PLS.GLM.biplot_SIMPLS: no visible global function definition for 'sd'
PLS.GLM.biplot_SIMPLS_no.SN: no visible binding for global variable
'sd'
PLS.GLM.biplot_SIMPLS_no.SN: no visible global function definition for
'sd'
PLS.GLM.biplot_no.SN: no visible binding for global variable 'sd'
PLS.GLM.biplot_no.SN: no visible global function definition for 'sd'
PLS.GLM.biplot_no_labels: no visible binding for global variable 'sd'
PLS.GLM.biplot_no_labels: no visible global function definition for
'sd'
PLS.biplot: no visible binding for global variable 'sd'
PLS.biplot.area: no visible binding for global variable 'sd'
PLS.biplot_no.SN: no visible binding for global variable 'sd'
PLS.biplot_no_labels: no visible binding for global variable 'sd'
SPLS.GLM.biplot: no visible binding for global variable 'sd'
SPLS.GLM.biplot: no visible global function definition for 'sd'
SPLS.GLM.biplot_no.SN: no visible binding for global variable 'sd'
SPLS.GLM.biplot_no.SN: no visible global function definition for 'sd'
SPLS.biplot: no visible binding for global variable 'sd'
SPLS.biplot_no_ax.labels: no visible binding for global variable 'sd'
SPLS.biplot_no_labels: no visible binding for global variable 'sd'
cov.biplot: no visible global function definition for 'cov'
cov.biplot: no visible global function definition for 'arrows'
cov.biplot: no visible global function definition for 'text'
cov.monoplot: no visible global function definition for 'cov'
cov.monoplot: no visible global function definition for 'arrows'
cov.monoplot: no visible global function definition for 'text'
draw.biplot : .samples.plot: no visible global function definition for
'text'
draw.biplot : .samples.plot: no visible global function definition for
'points'
draw.biplot : .predict.func: no visible global function definition for
'lines'
draw.biplot : .marker.label.cm: no visible global function definition
for 'par'
draw.biplot : .marker.label.cm: no visible global function definition
for 'lines'
draw.biplot : .marker.label.cm: no visible global function definition
for 'text'
draw.biplot : .lin.axes.plot: no visible global function definition for
'coefficients'
draw.biplot : .lin.axes.plot: no visible global function definition for
'lm'
draw.biplot : .lin.axes.plot: no visible global function definition for
'abline'
draw.biplot : .lin.axes.plot: no visible global function definition for
'par'
draw.biplot : .lin.axes.plot: no visible global function definition for
'mtext'
draw.biplot : .bags.plot: no visible global function definition for
'lines'
draw.biplot : .bags.plot: no visible global function definition for
'points'
draw.biplot : .ellipse.plot: no visible global function definition for
'lines'
draw.biplot : .new.samples.plot: no visible global function definition
for 'points'
draw.biplot : .new.samples.plot: no visible global function definition
for 'text'
draw.biplot : .class.means.plot: no visible global function definition
for 'points'
draw.biplot : .class.means.plot: no visible global function definition
for 'text'
draw.biplot : .density.plot: no visible global function definition for
'colorRampPalette'
draw.biplot : .density.plot: no visible global function definition for
'image'
draw.biplot : .density.plot: no visible global function definition for
'contour'
draw.biplot : .density.legend: no visible global function definition
for 'par'
draw.biplot : .density.legend: no visible global function definition
for 'rect'
draw.biplot : .density.legend: no visible global function definition
for 'axis'
draw.biplot: no visible global function definition for 'par'
draw.biplot: no visible global function definition for 'layout'
draw.biplot: no visible global function definition for 'arrows'
draw.biplot.with.triangles : .samples.plot: no visible global function
definition for 'text'
draw.biplot.with.triangles : .samples.plot: no visible global function
definition for 'points'
draw.biplot.with.triangles : .predict.func: no visible global function
definition for 'lines'
draw.biplot.with.triangles : .marker.label.cm: no visible global
function definition for 'par'
draw.biplot.with.triangles : .marker.label.cm: no visible global
function definition for 'lines'
draw.biplot.with.triangles : .marker.label.cm: no visible global
function definition for 'text'
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for 'coefficients'
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for 'lm'
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for 'abline'
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for 'par'
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for 'mtext'
draw.biplot.with.triangles : .bags.plot: no visible global function
definition for 'lines'
draw.biplot.with.triangles : .bags.plot: no visible global function
definition for 'points'
draw.biplot.with.triangles : .ellipse.plot: no visible global function
definition for 'lines'
draw.biplot.with.triangles : .new.samples.plot: no visible global
function definition for 'points'
draw.biplot.with.triangles : .new.samples.plot: no visible global
function definition for 'text'
draw.biplot.with.triangles : .class.means.plot: no visible global
function definition for 'points'
draw.biplot.with.triangles : .class.means.plot: no visible global
function definition for 'text'
draw.biplot.with.triangles : .density.plot: no visible global function
definition for 'colorRampPalette'
draw.biplot.with.triangles : .density.plot: no visible global function
definition for 'image'
draw.biplot.with.triangles : .density.plot: no visible global function
definition for 'contour'
draw.biplot.with.triangles : .density.legend: no visible global
function definition for 'par'
draw.biplot.with.triangles : .density.legend: no visible global
function definition for 'rect'
draw.biplot.with.triangles : .density.legend: no visible global
function definition for 'axis'
draw.biplot.with.triangles: no visible global function definition for
'par'
draw.biplot.with.triangles: no visible global function definition for
'layout'
draw.biplot.with.triangles: no visible global function definition for
'polygon'
draw.biplot.with.triangles: no visible global function definition for
'rainbow'
draw.biplot.with.triangles: no visible global function definition for
'arrows'
opt.penalty.values: no visible global function definition for
'flush.console'
Undefined global functions or variables:
abline arrows axis coefficients colorRampPalette contour cov
flush.console image layout legend lines lm mtext par points polygon
rainbow rect sd text
Consider adding
importFrom("grDevices", "colorRampPalette", "rainbow")
importFrom("graphics", "abline", "arrows", "axis", "contour", "image",
"layout", "legend", "lines", "mtext", "par", "points",
"polygon", "rect", "text")
importFrom("stats", "coefficients", "cov", "lm", "sd")
importFrom("utils", "flush.console")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 0.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘mixOmics’
Flavor: r-oldrel-macos-x86_64
Version: 0.1
Check: R code for possible problems
Result: NOTE
Mag.Bmat.plot: no visible global function definition for ‘plot’
Mag.Bmat.plot: no visible global function definition for ‘lines’
Mag.Bmat.plot: no visible global function definition for ‘text’
Mag.Bmat.plot: no visible global function definition for ‘legend’
PCA.biplot: no visible binding for global variable ‘sd’
PCA.biplot_no.SN: no visible binding for global variable ‘sd’
PLS.GLM.biplot: no visible binding for global variable ‘sd’
PLS.GLM.biplot: no visible global function definition for ‘sd’
PLS.GLM.biplot_SIMPLS: no visible binding for global variable ‘sd’
PLS.GLM.biplot_SIMPLS: no visible global function definition for ‘sd’
PLS.GLM.biplot_SIMPLS_no.SN: no visible binding for global variable
‘sd’
PLS.GLM.biplot_SIMPLS_no.SN: no visible global function definition for
‘sd’
PLS.GLM.biplot_no.SN: no visible binding for global variable ‘sd’
PLS.GLM.biplot_no.SN: no visible global function definition for ‘sd’
PLS.GLM.biplot_no_labels: no visible binding for global variable ‘sd’
PLS.GLM.biplot_no_labels: no visible global function definition for
‘sd’
PLS.biplot: no visible binding for global variable ‘sd’
PLS.biplot.area: no visible binding for global variable ‘sd’
PLS.biplot_no.SN: no visible binding for global variable ‘sd’
PLS.biplot_no_labels: no visible binding for global variable ‘sd’
SPLS.GLM.biplot: no visible binding for global variable ‘sd’
SPLS.GLM.biplot: no visible global function definition for ‘sd’
SPLS.GLM.biplot_no.SN: no visible binding for global variable ‘sd’
SPLS.GLM.biplot_no.SN: no visible global function definition for ‘sd’
SPLS.biplot: no visible binding for global variable ‘sd’
SPLS.biplot_no_ax.labels: no visible binding for global variable ‘sd’
SPLS.biplot_no_labels: no visible binding for global variable ‘sd’
cov.biplot: no visible global function definition for ‘cov’
cov.biplot: no visible global function definition for ‘plot’
cov.biplot: no visible global function definition for ‘arrows’
cov.biplot: no visible global function definition for ‘text’
cov.monoplot: no visible global function definition for ‘cov’
cov.monoplot: no visible global function definition for ‘plot’
cov.monoplot: no visible global function definition for ‘arrows’
cov.monoplot: no visible global function definition for ‘text’
draw.biplot : .samples.plot: no visible global function definition for
‘text’
draw.biplot : .samples.plot: no visible global function definition for
‘points’
draw.biplot : .predict.func: no visible global function definition for
‘lines’
draw.biplot : .marker.label.cm: no visible global function definition
for ‘par’
draw.biplot : .marker.label.cm: no visible global function definition
for ‘lines’
draw.biplot : .marker.label.cm: no visible global function definition
for ‘text’
draw.biplot : .lin.axes.plot: no visible global function definition for
‘coefficients’
draw.biplot : .lin.axes.plot: no visible global function definition for
‘lm’
draw.biplot : .lin.axes.plot: no visible global function definition for
‘abline’
draw.biplot : .lin.axes.plot: no visible global function definition for
‘par’
draw.biplot : .lin.axes.plot: no visible global function definition for
‘mtext’
draw.biplot : .bags.plot: no visible global function definition for
‘lines’
draw.biplot : .bags.plot: no visible global function definition for
‘points’
draw.biplot : .ellipse.plot: no visible global function definition for
‘lines’
draw.biplot : .new.samples.plot: no visible global function definition
for ‘points’
draw.biplot : .new.samples.plot: no visible global function definition
for ‘text’
draw.biplot : .class.means.plot: no visible global function definition
for ‘points’
draw.biplot : .class.means.plot: no visible global function definition
for ‘text’
draw.biplot : .density.plot: no visible global function definition for
‘colorRampPalette’
draw.biplot : .density.plot: no visible global function definition for
‘image’
draw.biplot : .density.plot: no visible global function definition for
‘contour’
draw.biplot : .density.legend: no visible global function definition
for ‘par’
draw.biplot : .density.legend: no visible global function definition
for ‘plot’
draw.biplot : .density.legend: no visible global function definition
for ‘rect’
draw.biplot : .density.legend: no visible global function definition
for ‘axis’
draw.biplot: no visible global function definition for ‘par’
draw.biplot: no visible global function definition for ‘layout’
draw.biplot: no visible global function definition for ‘plot’
draw.biplot: no visible global function definition for ‘arrows’
draw.biplot.with.triangles : .samples.plot: no visible global function
definition for ‘text’
draw.biplot.with.triangles : .samples.plot: no visible global function
definition for ‘points’
draw.biplot.with.triangles : .predict.func: no visible global function
definition for ‘lines’
draw.biplot.with.triangles : .marker.label.cm: no visible global
function definition for ‘par’
draw.biplot.with.triangles : .marker.label.cm: no visible global
function definition for ‘lines’
draw.biplot.with.triangles : .marker.label.cm: no visible global
function definition for ‘text’
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for ‘coefficients’
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for ‘lm’
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for ‘abline’
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for ‘par’
draw.biplot.with.triangles : .lin.axes.plot: no visible global function
definition for ‘mtext’
draw.biplot.with.triangles : .bags.plot: no visible global function
definition for ‘lines’
draw.biplot.with.triangles : .bags.plot: no visible global function
definition for ‘points’
draw.biplot.with.triangles : .ellipse.plot: no visible global function
definition for ‘lines’
draw.biplot.with.triangles : .new.samples.plot: no visible global
function definition for ‘points’
draw.biplot.with.triangles : .new.samples.plot: no visible global
function definition for ‘text’
draw.biplot.with.triangles : .class.means.plot: no visible global
function definition for ‘points’
draw.biplot.with.triangles : .class.means.plot: no visible global
function definition for ‘text’
draw.biplot.with.triangles : .density.plot: no visible global function
definition for ‘colorRampPalette’
draw.biplot.with.triangles : .density.plot: no visible global function
definition for ‘image’
draw.biplot.with.triangles : .density.plot: no visible global function
definition for ‘contour’
draw.biplot.with.triangles : .density.legend: no visible global
function definition for ‘par’
draw.biplot.with.triangles : .density.legend: no visible global
function definition for ‘plot’
draw.biplot.with.triangles : .density.legend: no visible global
function definition for ‘rect’
draw.biplot.with.triangles : .density.legend: no visible global
function definition for ‘axis’
draw.biplot.with.triangles: no visible global function definition for
‘par’
draw.biplot.with.triangles: no visible global function definition for
‘layout’
draw.biplot.with.triangles: no visible global function definition for
‘plot’
draw.biplot.with.triangles: no visible global function definition for
‘polygon’
draw.biplot.with.triangles: no visible global function definition for
‘rainbow’
draw.biplot.with.triangles: no visible global function definition for
‘arrows’
opt.penalty.values: no visible global function definition for
‘flush.console’
Undefined global functions or variables:
abline arrows axis coefficients colorRampPalette contour cov
flush.console image layout legend lines lm mtext par plot points
polygon rainbow rect sd text
Consider adding
importFrom("grDevices", "colorRampPalette", "rainbow")
importFrom("graphics", "abline", "arrows", "axis", "contour", "image",
"layout", "legend", "lines", "mtext", "par", "plot",
"points", "polygon", "rect", "text")
importFrom("stats", "coefficients", "cov", "lm", "sd")
importFrom("utils", "flush.console")
to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘PLSbiplot1-Ex.R’ failed
The error most likely occurred in:
> ### Name: Mag.Bmat.plot
> ### Title: Magnitude of the Partial Least Squares Regression (PLSR)
> ### coefficients matrix
> ### Aliases: Mag.Bmat.plot
>
> ### ** Examples
>
> if(require(pls))
+ data(oliveoil, package="pls")
Loading required package: pls
Attaching package: ‘pls’
The following object is masked from ‘package:stats’:
loadings
> X = as.matrix(oliveoil$chemical, ncol=5)
> dimnames(X) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
+ "S1","S2","S3","S4","S5","S6")),
+ paste(c("Acidity","Peroxide","K232","K270","DK")))
> Y = as.matrix(oliveoil$sensory, ncol=6)
> dimnames(Y) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
+ "S1","S2","S3","S4","S5","S6")),
+ paste(c("Yellow","Green","Brown","Glossy","Transp","Syrup")))
> Mag.Bmat.plot(X, Y, algorithm=mod.SIMPLS, A=2)
>
> #nutrimouse data
> if(require(mixOmics))
+ data(nutrimouse, package="mixOmics")
Loading required package: mixOmics
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘mixOmics’
> X1 = as.matrix(nutrimouse$lipid, ncol=21)
Error in as.matrix(nutrimouse$lipid, ncol = 21) :
object 'nutrimouse' not found
Execution halted
Flavor: r-oldrel-macos-x86_64