CRAN Package Check Results for Package NetRep

Last updated on 2020-08-07 01:49:53 CEST.

Check Details

Version: 1.2.1
Check: installed package size
Result: NOTE
     installed size is 9.9Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 7.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘NetRep-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: networkProperties
    > ### Title: Calculate the topological properties for a network module
    > ### Aliases: networkProperties
    >
    > ### ** Examples
    >
    > # load in example data, correlation, and network matrices for a discovery and test dataset:
    > data("NetRep")
    >
    > # Set up input lists for each input matrix type across datasets. The list
    > # elements can have any names, so long as they are consistent between the
    > # inputs.
    > network_list <- list(discovery=discovery_network, test=test_network)
    > data_list <- list(discovery=discovery_data, test=test_data)
    > correlation_list <- list(discovery=discovery_correlation, test=test_correlation)
    > labels_list <- list(discovery=module_labels)
    >
    > # Calculate the topological properties of all network modules in the discovery dataset
    > props <- networkProperties(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list
    + )
    [2020-07-27 20:28:00 BST] Validating user input...
    [2020-07-27 20:28:00 BST] Checking matrices for problems...
    [2020-07-27 20:28:00 BST] User input ok!
    [2020-07-27 20:28:00 BST] Calculating network properties of network subsets
     from dataset "discovery" in dataset "discovery"...
    
     *** caught segfault ***
    address fe4eb607, cause 'invalid permissions'
    
    Traceback:
     1: gc()
     2: netPropsInternal(network, data, moduleAssignments, modules, discovery, test, nDatasets, datasetNames, verbose, loadedIdx, dataEnv, networkEnv, FALSE)
     3: networkProperties(network = network_list, data = data_list, correlation = correlation_list, moduleAssignments = labels_list)
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 1.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [0m/180m]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(NetRep)
     >
     > test_check("NetRep")
    
     *** caught segfault ***
     address dcbb9bf3, cause 'memory not mapped'
Flavor: r-patched-solaris-x86

Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NetRep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Error: no more error handlers available (recursive errors?); invoking 'abort' restart
    Error in tryCatchOne(expr, names, parentenv, handlers[[1L]]) :
     attempt to apply non-function
    Calls: <Anonymous> ... withVisible -> eval -> eval -> modulePreservation -> gc
    Execution halted
Flavor: r-patched-solaris-x86