CRAN Package Check Results for Package MANOVA.RM

Last updated on 2020-08-07 01:49:51 CEST.

Check Details

Version: 0.3.4
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘nparLD’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.4
Check: dependencies in R code
Result: NOTE
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 0.3.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Introduction_to_MANOVA.RM.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    No protocol specified
    
    (R:51756): GLib-GObject-WARNING **: invalid (NULL) pointer instance
    
    (R:51756): GLib-GObject-CRITICAL **: g_signal_connect_data: assertion `G_TYPE_CHECK_INSTANCE (instance)' failed
    
    (R:51756): Gtk-WARNING **: Screen for GtkWindow not set; you must always set
    a screen for a GtkWindow before using the window
    
    (R:51756): Gdk-CRITICAL **: gdk_screen_get_default_colormap: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:51756): Gdk-CRITICAL **: gdk_colormap_get_visual: assertion `GDK_IS_COLORMAP (colormap)' failed
    
    (R:51756): Gdk-CRITICAL **: gdk_screen_get_default_colormap: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:51756): Gdk-CRITICAL **: gdk_screen_get_root_window: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:51756): Gdk-CRITICAL **: gdk_screen_get_root_window: assertion `GDK_IS_SCREEN (screen)' failed
    
    (R:51756): Gdk-CRITICAL **: gdk_window_new: assertion `GDK_IS_WINDOW (parent)' failed
    
     *** caught segfault ***
    address 0x18, cause 'memory not mapped'
    
    Traceback:
     1: .RGtkCall("S_gtk_widget_show_all", object, PACKAGE = "RGtk2")
     2: gtkWidgetShowAll(w)
     3: RGtk2::gtkWindow()
     4: GUI.MANOVA()
     5: eval(expr, envir, enclos)
     6: eval(expr, envir, enclos)
     7: withVisible(eval(expr, envir, enclos))
     8: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     9: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
    10: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
    11: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
    12: evaluate::evaluate(...)
    13: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    14: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    15: block_exec(params)
    16: call_block(x)
    17: process_group.block(group)
    18: process_group(group)
    19: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    20: process_file(text, output)
    21: knit(input, text = text, envir = envir, quiet = quiet)
    22: knit2html(..., force_v1 = TRUE)
    23: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
    24: vweave(...)
    25: engine$weave(file, quiet = quiet, encoding = enc)
    26: doTryCatch(return(expr), name, parentenv, handler)
    27: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    28: tryCatchList(expr, classes, parentenv, handlers)
    29: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    30: tools:::buildVignettes(dir = "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/MANOVA.RM.Rcheck/vign_test/MANOVA.RM", ser_elibs = "/tmp/RtmpI2BPdk/filec8a3252017fe.rds")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-macos-x86_64