Last updated on 2020-08-07 01:49:45 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3 | 4.36 | 51.63 | 55.99 | OK | --no-vignettes |
| r-devel-linux-x86_64-debian-gcc | 1.3 | 3.34 | 40.06 | 43.40 | OK | --no-vignettes |
| r-devel-linux-x86_64-fedora-clang | 1.3 | 82.30 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3 | 72.25 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.3 | 11.00 | 72.00 | 83.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.3 | 3.89 | 52.50 | 56.39 | OK | --no-vignettes |
| r-patched-solaris-x86 | 1.3 | 96.30 | OK | --no-vignettes | ||
| r-release-linux-x86_64 | 1.3 | 4.27 | 51.47 | 55.74 | OK | --no-vignettes |
| r-release-macos-x86_64 | 1.3 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.3 | 9.00 | 85.00 | 94.00 | OK | --no-vignettes |
| r-oldrel-macos-x86_64 | 1.3 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3 | 6.00 | 81.00 | 87.00 | OK | --no-vignettes |
Version: 1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GlobalAncova’
Flavor: r-release-macos-x86_64
Version: 1.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GlobalAncova’
Flavor: r-release-macos-x86_64
Version: 1.3
Check: examples
Result: ERROR
Running examples in ‘GiANT-Ex.R’ failed
The error most likely occurred in:
> ### Name: GiANT-package
> ### Title: Enrichment analysis
> ### Aliases: GiANT
>
> ### ** Examples
>
> # load data
> require(GlobalAncova)
Loading required package: GlobalAncova
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘GlobalAncova’
> data(vantVeer)
Warning in data(vantVeer) : data set ‘vantVeer’ not found
> data(phenodata)
Warning in data(phenodata) : data set ‘phenodata’ not found
> data(pathways)
Warning in data(pathways) : data set ‘pathways’ not found
>
> ##################################
> # Example 1: gene set analysis #
> ##################################
> res <- geneSetAnalysis(
+ # parameters for geneSetAnalysis
+ dat = vantVeer,
+ geneSets = pathways[1],
+ analysis = analysis.averageCorrelation(),
+ adjustmentMethod = "fdr",
+ # additional parameters for analysis.averageCorrelation
+ labs = phenodata$metastases,
+ method = "pearson",
+ numSamples = 50)
Error in geneSetAnalysis(dat = vantVeer, geneSets = pathways[1], analysis = analysis.averageCorrelation(), :
object 'pathways' not found
Execution halted
Flavor: r-release-macos-x86_64