Last updated on 2020-08-07 01:49:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.03.1 | 3.28 | 28.62 | 31.90 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.03.1 | 2.97 | 21.71 | 24.68 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.03.1 | 45.97 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.03.1 | 36.41 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.03.1 | 9.00 | 53.00 | 62.00 | NOTE | |
| r-patched-linux-x86_64 | 1.03.1 | 3.27 | 28.09 | 31.36 | NOTE | |
| r-patched-solaris-x86 | 1.03.1 | 54.40 | NOTE | |||
| r-release-linux-x86_64 | 1.03.1 | 2.95 | 27.97 | 30.92 | NOTE | |
| r-release-macos-x86_64 | 1.03.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.03.1 | 6.00 | 35.00 | 41.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.03.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.03.1 | 7.00 | 55.00 | 62.00 | NOTE |
Version: 1.03.1
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to 'impute' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.03.1
Check: R code for possible problems
Result: NOTE
GSA: no visible global function definition for 'impute.knn'
Undefined global functions or variables:
impute.knn
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.03.1
Check: Rd line widths
Result: NOTE
Rd file 'GSA.Rd':
\usage lines wider than 90 characters:
method=c("maxmean","mean","absmean"), resp.type=c("Quantitative","Two class unpaired","Survival","Multiclass", "Two class paired", "tCo ... [TRUNCATED]
\examples lines wider than 100 characters:
GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
# GSA.obj<-GSA(x,y, genenames=genenames, genesets=geneset.obj$genesets, resp.type="Two class unpaired", nperms=100)
Rd file 'GSA.func.Rd':
\usage lines wider than 90 characters:
s0 = NULL, s0.perc = NULL, minsize = 15, maxsize= 500, restand = TRUE, restand.basis=c("catalog","data"))
\examples lines wider than 100 characters:
# GSA.func.obj<-GSA.func(x,y, genenames=genenames, genesets=geneset.obj$genesets, resp.type="Two class unpaired")
Rd file 'GSA.genescores.Rd':
\examples lines wider than 100 characters:
GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
Rd file 'GSA.listsets.Rd':
\examples lines wider than 100 characters:
GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
Rd file 'GSA.plot.Rd':
\examples lines wider than 100 characters:
GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.03.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘impute’
Flavor: r-oldrel-macos-x86_64