Last updated on 2020-08-07 01:49:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 5.53 | 196.66 | 202.19 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 5.75 | 150.71 | 156.46 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 269.13 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 244.29 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.0 | 15.00 | 212.00 | 227.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0 | 6.11 | 196.04 | 202.15 | NOTE | |
| r-patched-solaris-x86 | 1.0 | 466.10 | NOTE | |||
| r-release-linux-x86_64 | 1.0 | 6.29 | 196.11 | 202.40 | NOTE | |
| r-release-macos-x86_64 | 1.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.0 | 14.00 | 259.00 | 273.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0 | 10.00 | 187.00 | 197.00 | NOTE |
Version: 1.0
Check: R code for possible problems
Result: NOTE
ESEA.Main: no visible global function definition for 'rnorm'
ESEA.Main: no visible global function definition for 'sd'
ESEA.Main: no visible global function definition for 'p.adjust'
PlotGlobEdgeCorProfile: no visible global function definition for
'lines'
PlotGlobEdgeCorProfile: no visible global function definition for
'colors'
PlotGlobEdgeCorProfile: no visible global function definition for
'points'
PlotGlobEdgeCorProfile: no visible global function definition for
'legend'
PlotGlobEdgeCorProfile: no visible global function definition for
'text'
PlotPathwayGraph: no visible global function definition for 'par'
PlotRunEnrichment: no visible global function definition for 'lines'
PlotRunEnrichment: no visible global function definition for 'colors'
PlotRunEnrichment: no visible global function definition for 'text'
SavePathway2File: no visible global function definition for 'is'
calEdgeCorScore: no visible global function definition for 'na.omit'
Undefined global functions or variables:
colors is legend lines na.omit p.adjust par points rnorm sd text
Consider adding
importFrom("grDevices", "colors")
importFrom("graphics", "legend", "lines", "par", "points", "text")
importFrom("methods", "is")
importFrom("stats", "na.omit", "p.adjust", "rnorm", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘graph’
Flavor: r-oldrel-macos-x86_64
Version: 1.0
Check: R code for possible problems
Result: NOTE
ESEA.Main: no visible global function definition for ‘rnorm’
ESEA.Main: no visible global function definition for ‘sd’
ESEA.Main: no visible global function definition for ‘p.adjust’
PlotGlobEdgeCorProfile: no visible global function definition for
‘plot’
PlotGlobEdgeCorProfile: no visible global function definition for
‘lines’
PlotGlobEdgeCorProfile: no visible global function definition for
‘colors’
PlotGlobEdgeCorProfile: no visible global function definition for
‘points’
PlotGlobEdgeCorProfile: no visible global function definition for
‘legend’
PlotGlobEdgeCorProfile: no visible global function definition for
‘text’
PlotPathwayGraph: no visible global function definition for ‘par’
PlotPathwayGraph: no visible global function definition for ‘plot’
PlotRunEnrichment: no visible global function definition for ‘plot’
PlotRunEnrichment: no visible global function definition for ‘lines’
PlotRunEnrichment: no visible global function definition for ‘colors’
PlotRunEnrichment: no visible global function definition for ‘text’
SavePathway2File: no visible global function definition for ‘is’
calEdgeCorScore: no visible global function definition for ‘na.omit’
Undefined global functions or variables:
colors is legend lines na.omit p.adjust par plot points rnorm sd text
Consider adding
importFrom("grDevices", "colors")
importFrom("graphics", "legend", "lines", "par", "plot", "points",
"text")
importFrom("methods", "is")
importFrom("stats", "na.omit", "p.adjust", "rnorm", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘ESEA.Rnw’
...
> PathwayNetwork <- Results[[2]][[1]]
> SavePathway2File(PathwayNetwork, layout = layout.circle,
+ file = "Graph")
[1] "...writing to file"
When sourcing ‘ESEA.R’:
Error: there is no package called ‘graph’
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.0
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘ESEA.Rnw’ using Sweave
Loading required package: igraph
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Loading required package: XML
Loading required package: parmigene
Error: processing vignette 'ESEA.Rnw' failed with diagnostics:
chunk 11
Error in loadNamespace(name) : there is no package called ‘graph’
--- failed re-building ‘ESEA.Rnw’
SUMMARY: processing the following file failed:
‘ESEA.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64