Last updated on 2020-08-07 01:49:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 7.18 | 95.39 | 102.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 5.81 | 70.00 | 75.81 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 128.70 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 114.46 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.1.1 | 22.00 | 251.00 | 273.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.1 | 7.06 | 90.01 | 97.07 | OK | |
| r-patched-solaris-x86 | 1.1.1 | 171.50 | WARN | |||
| r-release-linux-x86_64 | 1.1.1 | 7.20 | 91.87 | 99.07 | OK | |
| r-release-macos-x86_64 | 1.1.1 | WARN | ||||
| r-release-windows-ix86+x86_64 | 1.1.1 | 19.00 | 180.00 | 199.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.1.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.1 | 13.00 | 183.00 | 196.00 | NOTE |
Version: 1.1.1
Check: installed package size
Result: NOTE
installed size is 10.0Mb
sub-directories of 1Mb or more:
doc 4.7Mb
extdata 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "diagcode1"
# Missing values: 0 cases ( 0%)
# External causes codes: 0 cases ( 0%)
# V codes not mapped: 74330 cases ( 22.82%)
# Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
# Unique ICD9-CM codes mapped: 3020
# Total PheWAS codes: 757
# ICD9 codes not mapped: 105180 cases ( 32.29%)
Quitting from lines 317-322 (EHRtemporalVariability.Rmd)
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘EHRtemporalVariability.Rmd’
SUMMARY: processing the following file failed:
‘EHRtemporalVariability.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "diagcode1"
# Missing values: 0 cases ( 0%)
# External causes codes: 0 cases ( 0%)
# V codes not mapped: 74330 cases ( 22.82%)
# Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
# Unique ICD9-CM codes mapped: 3020
# Total PheWAS codes: 757
# ICD9 codes not mapped: 105180 cases ( 32.29%)
Warning in normalizePath(f2) :
path[1]="webshot718e4c32e073.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot718e4c32e073.png': No such file or directory
Quitting from lines 317-322 (EHRtemporalVariability.Rmd)
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘EHRtemporalVariability.Rmd’
SUMMARY: processing the following file failed:
‘EHRtemporalVariability.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "diagcode1"
# Missing values: 0 cases ( 0%)
# External causes codes: 0 cases ( 0%)
# V codes not mapped: 74330 cases ( 22.82%)
# Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
# Unique ICD9-CM codes mapped: 3020
# Total PheWAS codes: 757
# ICD9 codes not mapped: 105180 cases ( 32.29%)
Warning in normalizePath(f2) :
path[1]="webshot31cc12bfb80a.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot31cc12bfb80a.png': No such file or directory
Quitting from lines 317-322 (EHRtemporalVariability.Rmd)
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘EHRtemporalVariability.Rmd’
SUMMARY: processing the following file failed:
‘EHRtemporalVariability.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64