CRAN Package Check Results for Package BigTSP

Last updated on 2020-08-07 01:49:35 CEST.

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'gbm' 'glmnet' 'randomForest' 'tree'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    LDCAEst: no visible global function definition for 'glmnet'
    cv.LDCA: no visible global function definition for 'cv.glmnet'
    predict.LDCA: no visible global function definition for 'predict'
    predict.cv.LDCA: no visible global function definition for 'predict'
    predict.tsp.gbm: no visible global function definition for 'predict'
    predict.tsp.randomForest: no visible global function definition for
     'predict'
    predict.tsp.tree: no visible global function definition for 'predict'
    tsp.gbm: no visible global function definition for 'gbm.fit'
    tsp.randomForest: no visible global function definition for
     'randomForest'
    tsp.tree: no visible global function definition for 'tree.control'
    tsp.tree: no visible global function definition for 'tree'
    Undefined global functions or variables:
     cv.glmnet gbm.fit glmnet predict randomForest tree tree.control
    Consider adding
     importFrom("stats", "predict")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'predict.LDCA.Rd':
     \usage lines wider than 90 characters:
     predict(object, newx, s = NULL, type = c("link", "response", "coefficients", "nonzero", "class"), exact = FALSE, offset, ...)
    
    Rd file 'predict.tsp.randomForest.Rd':
     \usage lines wider than 90 characters:
     predict(object, newdata, type = "response", norm.votes = TRUE, predict.all = FALSE, proximity = FALSE, nodes = FALSE, cutoff, ...)
    
    Rd file 'predict.tsp.tree.Rd':
     \usage lines wider than 90 characters:
     predict(object, newdata, type = c("vector", "tree", "class", "where"), split = FALSE, nwts, eps = 0.001, ...)
    
    Rd file 'tsp.gbm.Rd':
     \usage lines wider than 90 characters:
     tsp.gbm(x, y, offset = NULL, misc = NULL, distribution = "bernoulli", w = NULL, var.monotone = NULL, n.trees = 100, interaction.depth = ... [TRUNCATED]
    
    Rd file 'tsp.randomForest.Rd':
     \usage lines wider than 90 characters:
     tsp.randomForest(x, y = NULL, xtest = NULL, ytest = NULL, ntree = 500, type = "classification", mtry = if (!is.null(y) && !is.factor(y) ... [TRUNCATED]
    
    Rd file 'tsp.tree.Rd':
     \usage lines wider than 90 characters:
     tsp.tree(X, response, control = tree.control(dim(X)[1], ...), method = "recursive.partition", split = c("deviance", "gini"), x = FALSE, ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64